Sequence
atgc intronic sequence ATGC exonic sequence...tacaagtacttaacttaattattaaaatgcgcccataacattatttaattatgtttgtgtactatgtggggtttgacatggtgtgatttgaatttaacagGAAATGGGGTTTTGAAAAGCTTGTGTATAGAGACTCAATTACAGGAATTCGTAGAGATCGAAAATATGCAGTGCAACCACGGAGTTTGTATGCAACAGGG
Basic information
species | Glycine max |
transcript | GLYMA16G14690.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|26058368|gb|CA801282.1|CA801282EST: CCTATGAGCAGCAAGATTTGCCTCTCTGAGGATTACGGCAAAACTTACAG GAAATGGGGTTTTGAAAAGCTTGTGTATAGAGACTCAATTACAGGAATTCG
genomic: CCTATGAGCAGCAAGATTTGCCTCTCTGAGGATTACGGCAAAACTTACAGgtacggtttt ... aatttaacagGAAATGGGGTTTTGAAAAGCTTGTGTATAGAGACTCAATTACAGGAATTCG
EST:
gi|12774808|gb|BG239756.1|BG239756EST: CCTATGAGCAGCAAGATTTGCCTCTCTGAGGATTACGGCAAAACTTACAG GAAATGGGGTTTTGAAAAGCT
genomic: CCTATGAGCAGCAAGATTTGCCTCTCTGAGGATTACGGCAAAACTTACAGgtacggtttt ... aatttaacagGAAATGGGGTTTTGAAAAGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taattatgtttgtgtactatgtggggtttgacatggtgtgatttgaatttaacagGAAATGGGGTTTTGAAAAGCTTGTGTATAGAGACTCAATTACAGGAATTCGTAGAGATCGAAAATATGCAGTGCAACCACGGAGTTTGTATGCAACAGGG
gtttgac putative branch site (score: 4)
tgatttgaatttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tacaagtacttaacttaattattaaaatgcgcccataacattatttaattatgtttgtgtactatgtggggtttgacatggtgtgatttgaatttaacagGAAATGGGGTTTTGAAAAGCTTGTGTATAGAGACTCAATTACAGGAATTCGTAGAGATCGAAAATATGCAGTGCAACCACGGAGTTTGTATGCAACAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- caagtac
- - - - - - - - - - - - - - -cgcccat
- - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgtg