1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttcgtaccttacctttctcattctctcttcttctcttctcttctatcaccgttgactcacgactaatcacatattacttattaaacttgtaatcaaagtttattcaaacaaactctgctgcctttgacttttatgttcactctgctttatatatgacagAAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTACCAGACTGACGAGAGAAGAAAAAAGATTAGCAAATTTAAGGAATCAGCCT
species | Glycine max |
transcript | GLYMA16G12080.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAG AAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTACEST: gi|151411962|gb|EV281773.1|EV281773
genomic: CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAGgttcgtacct ... tatatgacagAAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTAC
EST: CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAG AAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTACEST: gi|10238953|gb|BE807841.1|BE807841
genomic: CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAGgttcgtacct ... tatatgacagAAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTAC
EST: CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAG AAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTACEST: gi|193675477|gb|FK616509.1|FK616509
genomic: CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAGgttcgtacct ... tatatgacagAAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTAC
EST: CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAG AAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTACEST: gi|193417921|gb|FK384313.1|FK384313
genomic: CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAGgttcgtacct ... tatatgacagAAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTAC
EST: TTTCTCGACCGATTCATATTCGAG AAAGTGGCTAGACGATTGATTTTTTGGAAAGGGGCATGCGGTCGCTGGACTEST: gi|7685255|gb|AW755903.1|AW755903
genomic: TTTCTCGACCGATTCATATTCGAGgttcgtacct ... tatatgacagAAAGTGGCTAGACGATTGA-TTTTTGGAAAGGGGCATGCGG-CGCTGGACT
EST: CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAG AAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTACEST: gi|23063878|gb|BU578660.1|BU578660
genomic: CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAGgttcgtacct ... tatatgacagAAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTAC
EST: CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGATTGATTCATATTCGAG AAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTACEST: gi|151408094|gb|EV277902.1|EV277902
genomic: CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAGgttcgtacct ... tatatgacagAAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTAC
EST: CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAG AAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTACEST: gi|298185707|gb|HO030920.1|HO030920
genomic: CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAGgttcgtacct ... tatatgacagAAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTAC
EST: CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAG AAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTAC
genomic: CTCTCTTCTTCCCCTCCCTTCGCTTCTTTCTCGACCGATTCATATTCGAGgttcgtacct ... tatatgacagAAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTAC
caaacaaactctgctgcctttgacttttatgttcactctgctttatatatgacagAAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTACCAGACTGACGAGAGAAGAAAAAAGATTAGCAAATTTAAGGAATCAGCCT
ctttgac putative branch site (score: 4)
tttatatatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtaccttacctttctcattctctcttcttctcttctcttctatcaccgttgactcacgactaatcacatattacttattaaacttgtaatcaaagtttattcaaacaaactctgctgcctttgacttttatgttcactctgctttatatatgacagAAAGTGGCTAGACGATTGATTTTTGGAAAGGGGCATGCGGCGCTGGACTACCAGACTGACGAGAGAAGAAAAAAGATTAGCAAATTTAAGGAATCAGCCT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA