1 5' 3' |
...agacagataaaccttcgtcttaaattccttggtagttacataatacaattttagatattcattgaaaaaaatgttgacttgaaccttttctgaatgccagGAGGATTGCACAAGTAAAAGAGAACCAATGTCAAATTGCTGTAGAAGATGTTATGTACTTGCTGATTTTTTACAAGTTTTCTGAGATCAGGGTCCCTATG
species | Glycine max |
transcript | GLYMA16G10780.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATGCCCGCATGGTGCTTGGTTCTGCCTCCGATGAGGCCTTGCTTCACAG GAGGATTGCACAAGTAAAAGAGAACCAATGTCAAATTGCTGTAGAAGATGTEST: gi|15204647|gb|BI427415.1|BI427415
genomic: CATGCCCGCATGGTGCTTGGTTCTGCCTCCGATGAGGCCTTGCTTCACAGgttcgtggaa ... tgaatgccagGAGGATTGCACAAGTAAAAGAGAACCAATGTCAAATTGCTGTAGAAGATGT
EST: CATGCCCGCATGGTGCTTGGTTCTGCCTCCGATGAGGCCTTGCTTCACAG GAGGATTGCACAAGTAAAAGAGAACCAATGTCAAATTGCTGTAGAAGATGTEST: gi|6951755|gb|AW423823.1|AW423823
genomic: CATGCCCGCATGGTGCTTGGTTCTGCCTCCGATGAGGCCTTGCTTCACAGgttcgtggaa ... tgaatgccagGAGGATTGCACAAGTAAAAGAGAACCAATGTCAAATTGCTGTAGAAGATGT
EST: CATGCCCGCATGGTGCTTGGTTCTGCCTCCGATGAGGCCTTGCTTCACAG GAGGATTGCACAAGTAAAAGAGAACCAATGTCAAATTGCTGTAGAAGATGT
genomic: CATGCCCGCATGGTGCTTGGTTCTGCCTCCGATGAGGCCTTGCTTCACAGgttcgtggaa ... tgaatgccagGAGGATTGCACAAGTAAAAGAGAACCAATGTCAAATTGCTGTAGAAGATGT
caattttagatattcattgaaaaaaatgttgacttgaaccttttctgaatgccagGAGGATTGCACAAGTAAAAGAGAACCAATGTCAAATTGCTGTAGAAGATGTTATGTACTTGCTGATTTTTTACAAGTTTTCTGAGATCAGGGTCCCTATG
tgttgac putative branch site (score: 3)
ccttttct putative PPT
ttagatattcattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agacagataaaccttcgtcttaaattccttggtagttacataatacaattttagatattcattgaaaaaaatgttgacttgaaccttttctgaatgccagGAGGATTGCACAAGTAAAAGAGAACCAATGTCAAATTGCTGTAGAAGATGTTATGTACTTGCTGATTTTTTACAAGTTTTCTGAGATCAGGGTCCCTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - -gataaac
- - - - - - - - - - - - ttccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgac