1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagtgtcgcctccaaagtttgaatcttttctgcgtttcctcatctgggtcctgatccctttctcgtttttggatttgggtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTGATTTGAAGGGGAAGAGGGTATTCGTGAGGGTCGATCTGAACGTGCCTT
species | Glycine max |
transcript | GLYMA15G41550.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|254319185|gb|GR830533.1|GR830533
genomic: GTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: CACCGATATTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|298184361|gb|HO029574.1|HO029574
genomic: CACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|213590337|gb|DB963872.1|DB963872
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|213618073|gb|DB963706.1|DB963706
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|209701525|gb|BW667346.1|BW667346
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|209726275|gb|BW659601.1|BW659601
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|209723637|gb|BW662545.1|BW662545
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGCGAGGGEST: gi|193713246|gb|FK651879.1|FK651879
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAG-GAGGG
EST: TTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|213589807|gb|DB959418.1|DB959418
genomic: TTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|298190988|gb|HO038467.1|HO038467
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|209717610|gb|BW679690.1|BW679690
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|209706842|gb|BW653134.1|BW653134
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|254340232|gb|GR858357.1|GR858357
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|254333389|gb|GR841251.1|GR841251
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|151408797|gb|EV278605.1|EV278605
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|120531954|gb|EH260087.1|EH260087
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: CACACTACACCNGATATTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|298176127|gb|HO015532.1|HO015532
genomic: CACACTACACC-GATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: GCTAGTTGCCACGCTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAGATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|19269452|gb|BM885708.1|BM885708
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|192329504|gb|FK021874.1|FK021874
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|209709214|gb|BW657183.1|BW657183
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|193640045|gb|FK587138.1|FK587138
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: TTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|213614766|gb|DB970771.1|DB970771
genomic: TTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|213606522|gb|DB971318.1|DB971318
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|209700685|gb|BW670461.1|BW670461
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|298195007|gb|HO043535.1|HO043535
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|209708596|gb|BW678773.1|BW678773
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|192307309|gb|FK001267.1|FK001267
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: GCTAGTTGCCACACTACACCGATATTCCCACCAAACCCGTTTGCATTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|209717628|gb|BW653990.1|BW653990
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTEST: gi|13789062|gb|BG651653.1|BG651653
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: ACCAAACCCGTTTGCGTTGTT GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: ACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
gtttcctcatctgggtcctgatccctttctcgtttttggatttgggtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTGATTTGAAGGGGAAGAGGGTATTCGTGAGGGTCGATCTGAACGTGCCTT
tcctgat putative branch site (score: 3)
ttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgtcgcctccaaagtttgaatcttttctgcgtttcctcatctgggtcctgatccctttctcgtttttggatttgggtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTGATTTGAAGGGGAAGAGGGTATTCGTGAGGGTCGATCTGAACGTGCCTT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG