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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttatataaaataaacataaaccctagtgtcatcaccttgtcattttactagtttttgtcataaagctttgcaaattaatgcttactcattgtttcaattttccagGAAAGGTCAACCGAAGATAACATTCCCAGTTTTCATGCAAATTTTTATTCTTGCTCTTCTTGG

Basic information

species Glycine max
transcript GLYMA15G36200.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G36200.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv13s0084g00090.t01 (Vitis vinifera), 3'ss of exon 1
gtttatataaaataaacataaaccctagtgtcatcaccttgtcattttactagtttttgtcataaagctttgcaaattaatgcttactcattgtttcaattttccagGAAAGGTCAACCGAAGATAACATTCCCAGTTTTCATGCAAATTTTTATTCTTGCTCTTCTTGG
   || || | || |||  ||| |  ||    |  | ||| || ||  |  ||||    ||  |||  |||    |||  | | |  |  || ||   || ||||||||| |  ||||| |||||||||||||  |||||||||||||| ||| || | |||||||||||
--gtacattacatgaactgaaatc--agaaaaaatagcttttc-ttggatcagttccc-tcggaaa--tttattgattctttcatgttttttttt---atgttccagGAAGGCGCAACCAAAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTTGGCTCTTCTTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120532886|gb|EH261019.1|EH261019
EST:     CACGCTTTTGCCACCGCTGTCATAGCTCCTTTTGCCATTATTTTTGAAAG                         GAAAGGTCAACCGAAGATAACATTCCCAGTTTTCATGCAAATTTTTATTCT
genomic: CACGCTTTTGCCACCGCTGTCATAGCTCCTTTTGCCATTATTTTTGAAAGgtttatataa ... aattttccagGAAAGGTCAACCGAAGATAACATTCCCAGTTTTCATGCAAATTTTTATTCT
EST: gi|120532701|gb|EH260834.1|EH260834
EST:     CACGCTTTTGCCACCGCTGTCATAGCTCCTTTTGCCATTATTTTTGAAAG                         GAAAGGTCAACCGAAGATAACATTCCCAGTTTTCATGCAAATTTTTATTCT
genomic: CACGCTTTTGCCACCGCTGTCATAGCTCCTTTTGCCATTATTTTTGAAAGgtttatataa ... aattttccagGAAAGGTCAACCGAAGATAACATTCCCAGTTTTCATGCAAATTTTTATTCT
EST: gi|298194240|gb|HO040888.1|HO040888
EST:     CACGCTTTTGCCACCGCTGTCATAGCTCCTTTTGCCATTATTTTTGAAAG                         GAAAGGTCAACCGAAGATAACATTCCCAGTTTTCATGCAAATTTTTATTCT
genomic: CACGCTTTTGCCACCGCTGTCATAGCTCCTTTTGCCATTATTTTTGAAAGgtttatataa ... aattttccagGAAAGGTCAACCGAAGATAACATTCCCAGTTTTCATGCAAATTTTTATTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttttgtcataaagctttgcaaattaatgcttactcattgtttcaattttccagGAAAGGTCAACCGAAGATAACATTCCCAGTTTTCATGCAAATTTTTATTCTTGCTCTTCTTGG
                            tgcttac  putative branch site (score: 2)
                                               ttttcc  putative PPT
                                     attgtttcaatttt  TA-rich tract