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gttcaccttctcatattttttttttcaatttctattgtttattttgtgaggctttgttggtttttgttttcatgtgtatgtgattattggttattggtgatttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACT
species | Glycine max |
transcript | GLYMA15G19670.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTGEST: gi|298176954|gb|HO026961.1|HO026961
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... ttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
EST: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTGEST: gi|254315873|gb|GR825682.1|GR825682
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... ttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
EST: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTGEST: gi|192296158|gb|FG989743.1|FG989743
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... ttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
EST: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTGEST: gi|192311335|gb|FK003792.1|FK003792
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... ttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
EST: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTGEST: gi|207705100|gb|GD685621.1|GD685621
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... ttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
EST: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTGEST: gi|151412062|gb|EV281874.1|EV281874
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... ttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
EST: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTGEST: gi|15813460|gb|BI785735.1|BI785735
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... ttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
EST: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG AGCATAGCTCAAGTGACTGAAGCGACTTTGCTATATTATGAGGAGGGATTGEST: gi|208132563|gb|GD933072.1|GD933072
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... ttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
EST: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTGEST: gi|27446368|gb|CA953491.1|CA953491
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... ttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
EST: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTGEST: gi|254317668|gb|GR826652.1|GR826652
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... ttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
EST: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTGEST: gi|209718196|gb|BW657828.1|BW657828
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... ttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
EST: GAAAGCCACTGGNTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTGEST: gi|13181628|gb|BG352968.1|BG352968
genomic: GAAAGCCACTGG-TTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... ttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
EST: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATCG
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... ttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
ttggtttttgttttcatgtgtatgtgattattggttattggtgatttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACT
atttgaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcaccttctcatattttttttttcaatttctattgtttattttgtgaggctttgttggtttttgttttcatgtgtatgtgattattggttattggtgatttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTGCAAGCTTGCAGTGAAGCAGCCAAGACATGGATGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA