1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttcgtagcaccgcaatgcatcatctctcttcgattttcagtttcctctcaaaaactcacttttcgtgaaaattggttttcgatttttttgtttttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAGGCTCGCGACCGCGTCACCAATGAGACCATCGCTCTCAAGAAGATTCGCC
species | Glycine max |
transcript | GLYMA15G14390.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAG TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAGEST: gi|298167421|gb|HO012684.1|HO012684
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAG TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAGEST: gi|193354270|gb|FK319842.1|FK319842
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAG TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAGGEST: gi|11273760|gb|BF324155.1|BF324155
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: TCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAG TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAGEST: gi|192301718|gb|FG994412.1|FG994412
genomic: TCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAG TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAGEST: gi|298177896|gb|HO021921.1|HO021921
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAG TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAGEST: gi|9985866|gb|BE660093.1|BE660093
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAG TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAGEST: gi|213592499|gb|DB971641.1|DB971641
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCAATGGAACAG TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAGEST: gi|209726535|gb|BW658089.1|BW658089
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAG TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAGEST: gi|193656306|gb|FK603352.1|FK603352
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: ATCTTCTTCCATGGAACAG TTCGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAGEST: gi|298179279|gb|HO027750.1|HO027750
genomic: ATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAG TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAGEST: gi|298193236|gb|HO033670.1|HO033670
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAG TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAGGEST: gi|151411049|gb|EV280860.1|EV280860
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: GCAAAACCGCTCCAGCCTTGTTTCTTCACAGATCTTCTTCCATGGAACAG TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAGEST: gi|41145798|gb|CK606009.1|CK606009
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAG TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAGEST: gi|192302862|gb|FG998544.1|FG998544
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAG TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAGEST: gi|192304397|gb|FG996719.1|FG996719
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAG TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
caaaaactcacttttcgtgaaaattggttttcgatttttttgtttttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAGGCTCGCGACCGCGTCACCAATGAGACCATCGCTCTCAAGAAGATTCGCC
aactcac putative branch site (score: 2)
ttttcgatttttttgt putative PPT
ttttcgatttttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtagcaccgcaatgcatcatctctcttcgattttcagtttcctctcaaaaactcacttttcgtgaaaattggttttcgatttttttgtttttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAGGCTCGCGACCGCGTCACCAATGAGACCATCGCTCTCAAGAAGATTCGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG