1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gcaatgcatttatggtggtcaaatggtgtgagtgagtttgaagtaaggaaaggttgattgagtagtactcacttgagaaatttcaaattttattgtgcagGTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCCAAGGTTGCTGTTTCATTCACTCACATCATCAAGAGTGGAGAGCCAGCTT
species | Glycine max |
transcript | GLYMA15G11270.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCT GTTGCGGTGGCACACACAATTGGGCATGTEST: gi|10709050|gb|BF008711.1|BF008711
genomic: TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCTgtaagaaatt ... tattgtgcagGTTGCGGTGGCACACACAATTGGGCATGT
EST: TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCT GTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCCEST: gi|120496169|gb|EH224336.1|EH224336
genomic: TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCTgtaagaaatt ... tattgtgcagGTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCC
EST: TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCT GTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCCEST: gi|7145687|gb|AW507609.1|AW507609
genomic: TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCTgtaagaaatt ... tattgtgcagGTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCC
EST: TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCT GTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCCEST: gi|120494126|gb|EH222293.1|EH222293
genomic: TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCTgtaagaaatt ... tattgtgcagGTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCC
EST: TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCT GTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCCEST: gi|120532933|gb|EH261066.1|EH261066
genomic: TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCTgtaagaaatt ... tattgtgcagGTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCC
EST: TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCT GTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCCEST: gi|120496437|gb|EH224604.1|EH224604
genomic: TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCTgtaagaaatt ... tattgtgcagGTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCC
EST: TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTACCT GTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCCEST: gi|7926235|gb|AW832261.1|AW832261
genomic: TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCTgtaagaaatt ... tattgtgcagGTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCC
EST: TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCT GTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCCEST: gi|120494188|gb|EH222355.1|EH222355
genomic: TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCTgtaagaaatt ... tattgtgcagGTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCC
EST: TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCT GTTGCGGTGGCACACACAATTGGGCATGTTG
genomic: TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCTgtaagaaatt ... tattgtgcagGTTGCGGTGGCACACACAATTGGGCATGTTG
aggaaaggttgattgagtagtactcacttgagaaatttcaaattttattgtgcagGTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCCAAGGTTGCTGTTTCATTCACTCACATCATCAAGAGTGGAGAGCCAGCTT
tactcac putative branch site (score: 1)
ttttatt putative PPT
ttgagaaatttcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaatgcatttatggtggtcaaatggtgtgagtgagtttgaagtaaggaaaggttgattgagtagtactcacttgagaaatttcaaattttattgtgcagGTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCCAAGGTTGCTGTTTCATTCACTCACATCATCAAGAGTGGAGAGCCAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - tgcattt
- - - - - - tggtggt
- - - - - - - - - - - -tggtgtg
- - - - - - - - - - - - - - - - -gagtttg