Sequence
atgc intronic sequence ATGC exonic sequencegtatggttgatttgtctttcagagtgttcttcatctttttggggggttgcattcatgcttagctaaattggttttcagGATATCTATTACCGGAAAGCAAAAGAAGAAGGTTGGCGAGCTCGAAGTGCGTTTAAACTCCTTCAGATAGACGAGGAATTCAACCTTTTTGATG
Basic information
species | Glycine max |
transcript | GLYMA15G07970.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G07970.4 (Glycine max), 3'ss of exon 2
lower sequence: AT5G01230.1 (Arabidopsis thaliana), 3'ss of exon 2
----gtatggtt--gatttgtctttcagagtgttcttcat--------ctttttggggggttgcattcatg----cttagcta----------aattggttttcagGATATCTATTACCGGAAAGCAAAAGAAGAAGGTTGGCGAGCTCGAAGTGCGTTTAAACTCCTTCAGATAGACGAGGAATTCAACCTTTTTGATG
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gtatgtatgccttgaatgaggttcttagagctttatgtaaaaggtgcgcatttctcagaattatactcgtgagttcttaactgttcctccaccaattggttg-cagGATATCTATTATCGTAAAGCTAAAGAAGAAGGATGGCGTGCAAGAAGTGCTTTTAAGCTTCTTCAGATTGATGAAGAATTTAATATTTTTGAAG
upper sequence: GLYMA15G07970.4 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0007g01960.t01 (Vitis vinifera), 3'ss of exon 1
gtatggttgatttgtctttcagagtgttc---ttcatctttttggggggttgcattc----atgcttagctaa-----attggttttcagGATATCTATTACCGGAAAGCAAAAGAAGAAGGTTGGCGAGCTCGAAGTGCGTTTAAACTCCTTCAGATAGACGAGGAATTCAACCTTTTTGATG
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gtgggtttaatttctcattctaatttcttctgttcaatttccggtgtgttttcatttttcagtttttagtaaaggttgattagtttgcagGATATCTACTATCGTAAAGCAAAGGAAGAAGGTTGGCGTGCTCGAAGTGCCTTCAAACTCCTTCAGATTGATGAGGAATTCAACATATTTGAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151411265|gb|EV281076.1|EV281076EST: ATTTGTGGCACAGCAAGTGAGCGATGGGGAGAGCTTCAAGGGATAAGAGG GATATCTATTACCGGAAAGCAAAAGAAGAAGGTTGGCGAGCTCGAAGTGCG
genomic: ATTTGTGGCACAGCAAGTGAGCGATGGGGAGAGCTTCAAGGGATAAGAGGgtatggttga ... tggttttcagGATATCTATTACCGGAAAGCAAAAGAAGAAGGTTGGCGAGCTCGAAGTGCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgttcttcatctttttggggggttgcattcatgcttagctaaattggttttcagGATATCTATTACCGGAAAGCAAAAGAAGAAGGTTGGCGAGCTCGAAGTGCGTTTAAACTCCTTCAGATAGACGAGGAATTCAACCTTTTTGATG
agctaaa putative branch site (score: 3)
ttttc putative PPT
atcttttt TA-rich tract