1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtactaattaatgctctctctctttttaattttaattctccgcattcgcctaatttcgttggatcaaacttgtttggcgttgccgccgttcaatccctaaccctaatgtgttccttcaccaatgtctaatgaattgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTGCTTTGCGAGAGATGCAGGCCAAGGTCGAGAAGGAAATGGGATCTGCGC
species | Glycine max |
transcript | GLYMA15G06030.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTEST: gi|207790062|gb|GD762655.1|GD762655
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATAAAGCTGCTEST: gi|213601245|gb|DB956525.1|DB956525
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTEST: gi|298180958|gb|HO022397.1|HO022397
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTEST: gi|6070622|gb|AW100009.1|AW100009
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATEST: gi|42722883|gb|CK768782.1|CK768782
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGAT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTEST: gi|298185074|gb|HO030287.1|HO030287
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTEST: gi|192328207|gb|FK022886.1|FK022886
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTEST: gi|6069351|gb|AW099039.1|AW099039
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTEST: gi|298190403|gb|HO032524.1|HO032524
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTEST: gi|58017279|gb|CX704021.1|CX704021
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TCATGGAAAACGACGACGTCGACATGCACGCTGCNGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTEST: gi|207786394|gb|GD757079.1|GD757079
genomic: TCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTEST: gi|254344519|gb|GR851216.1|GR851216
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTEST: gi|6719591|gb|AW307238.1|AW307238
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTEST: gi|298168308|gb|HO014483.1|HO014483
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTEST: gi|298185485|gb|HO030698.1|HO030698
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTEST: gi|298192309|gb|HO036391.1|HO036391
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTEST: gi|213598861|gb|DB968332.1|DB968332
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTEST: gi|213593639|gb|DB971661.1|DB971661
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTEST: gi|298182732|gb|HO031467.1|HO031467
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTEST: gi|298173505|gb|HO016841.1|HO016841
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTEST: gi|193585151|gb|FK543828.1|FK543828
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGEST: gi|192295418|gb|FG987032.1|FG987032
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAG
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTEST: gi|4301526|gb|AI443203.1|AI443203
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTEST: gi|6455476|gb|AW186159.1|AW186159
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTEST: gi|208025773|gb|GD824297.1|GD824297
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTEST: gi|298191170|gb|HO038649.1|HO038649
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTEST: gi|213619495|gb|DB969446.1|DB969446
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTEST: gi|192310801|gb|FK000301.1|FK000301
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTEST: gi|298180467|gb|HO022020.1|HO022020
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTEST: gi|298174563|gb|HO017786.1|HO017786
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
EST: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAA GAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
genomic: TTCTCATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAgtactaatta ... ttgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCT
ttcaatccctaaccctaatgtgttccttcaccaatgtctaatgaattgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTGCTTTGCGAGAGATGCAGGCCAAGGTCGAGAAGGAAATGGGATCTGCGC
taatgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactaattaatgctctctctctttttaattttaattctccgcattcgcctaatttcgttggatcaaacttgtttggcgttgccgccgttcaatccctaaccctaatgtgttccttcaccaatgtctaatgaattgggttcagGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTGCTTTGCGAGAGATGCAGGCCAAGGTCGAGAAGGAAATGGGATCTGCGC
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