1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtttgcgtttcgtttctctagttattcctttgttgctgttgttgcgtgtaatcaaaatttgaagcgaaggcgacgattttgttgacatatctgaaaaaaacgcagTTACGCTGTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAGTGAACGGAATAAAAGATGCGGCAGAAAAGTACGGGTGCGTGTACGTGTT
species | Glycine max |
transcript | GLYMA15G05360.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGCGAACAGAACAAGTTCATAATGCCAAAGTCAAAGAGAAATAGACAAG TTACGCTGTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAGEST: gi|17400452|gb|BM177234.1|BM177234
genomic: CTGCGAACAGAACAAGTTCATAATGCCAAAGTCAAAGAGAAATAGACAAGgtttgcgttt ... aaaaacgcagTTACGCTGTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAG
EST: CTGCGAACAGAACAAGTTCATAATGCCAAAGTCAAAGAGAAATAGACAAG TTACGCTGTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAGEST: gi|151409671|gb|EV279479.1|EV279479
genomic: CTGCGAACAGAACAAGTTCATAATGCCAAAGTCAAAGAGAAATAGACAAGgtttgcgttt ... aaaaacgcagTTACGCTGTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAG
EST: CTGCGAACAGAACAAGTTCATAATGCCAAAGTCAAAGAGAAATAGACAAG TTACGCTGTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAGEST: gi|298188090|gb|HO032047.1|HO032047
genomic: CTGCGAACAGAACAAGTTCATAATGCCAAAGTCAAAGAGAAATAGACAAGgtttgcgttt ... aaaaacgcagTTACGCTGTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAG
EST: CTGCGAACAGAACAAGTTCATAATGCCAAAGTCAAAGAGAAATAGACAAG TTACGCTGTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAGEST: gi|298178045|gb|HO027428.1|HO027428
genomic: CTGCGAACAGAACAAGTTCATAATGCCAAAGTCAAAGAGAAATAGACAAGgtttgcgttt ... aaaaacgcagTTACGCTGTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAG
EST: CTGCGAACAGAACAAGTTCATAATGCCAAAGTCAAAGAGAAATAGACAAG TTACGCTGTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAGEST: gi|298192153|gb|HO036235.1|HO036235
genomic: CTGCGAACAGAACAAGTTCATAATGCCAAAGTCAAAGAGAAATAGACAAGgtttgcgttt ... aaaaacgcagTTACGCTGTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAG
EST: CTGCGAACAGAACAAGTTCATAATGCCAAAGTCAAAGAGAAATAGACAAG TTACGCTGTCAAAGACGAAGAAAAAGGGAAGAGACCACAAGGAGACGATAGEST: gi|33390011|gb|CA853218.1|CA853218
genomic: CTGCGAACAGAACAAGTTCATAATGCCAAAGTCAAAGAGAAATAGACAAGgtttgcgttt ... aaaaacgcagTTACGCTGTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAG
EST: CTGCGAACAGAACAAGTTCACAATGCCAAAGTCAAAGAGAAATAGACAAG TTACGCTGTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAGEST: gi|213597447|gb|DB962525.1|DB962525
genomic: CTGCGAACAGAACAAGTTCATAATGCCAAAGTCAAAGAGAAATAGACAAGgtttgcgttt ... aaaaacgcagTTACGCTGTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAG
EST: CTGCGAACAGAACAAGTTCATAATGCCAAAGTCAAAGAGAAATAGACAAG TTACGCTGTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAG
genomic: CTGCGAACAGAACAAGTTCATAATGCCAAAGTCAAAGAGAAATAGACAAGgtttgcgttt ... aaaaacgcagTTACGCTGTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAG
atcaaaatttgaagcgaaggcgacgattttgttgacatatctgaaaaaaacgcagTTACGCTGTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAGTGAACGGAATAAAAGATGCGGCAGAAAAGTACGGGTGCGTGTACGTGTT
tgttgac putative branch site (score: 3)
atatctgaaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcgtttcgtttctctagttattcctttgttgctgttgttgcgtgtaatcaaaatttgaagcgaaggcgacgattttgttgacatatctgaaaaaaacgcagTTACGCTGTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAGTGAACGGAATAAAAGATGCGGCAGAAAAGTACGGGTGCGTGTACGTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG