1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gatcaatactgtgtcatatgcgtgaaacattttgtttgtataatgctattgaaatcaatgggtggctgatgctcttacctcatatcatatgtgctttcagCTATTAGTGAACCTTCACAATGGCAGATCTCAAGGAGAGGCTACTAGCACCAAAACCTGCATCAGCTCTTAACGTAAGAGAGGTTTCCAATCGACCATCT
species | Glycine max |
transcript | GLYMA15G00510.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCGATTTCTGTTGAAGAACACCCGGAG CTATTAGTGAACCTTCACAATGGCAGATCTCAAGGAGAGGCTACTAGCACCEST: gi|6069749|gb|AW099369.1|AW099369
genomic: CTCGATTTCTGTTGAAGAACACCCGGAGgtatgaatgt ... gtgctttcagCTATTAGTGAACCTTCACAATGGCAGATCTCAAGGAGAGGCTACTAGCACC
EST: TTATTGCAAATCCTGGGTATTACTCGATTTCTGTTGAAGAACACCCGGAG CTATTAGTGAACCTTCACAATGGCAGATCTCAAGGAGAGGCTACTAGCACCEST: gi|209728851|gb|BW655479.1|BW655479
genomic: TTATTGCAAATCCTGGGTATTACTCGATTTCTGTTGAAGAACACCCGGAGgtatgaatgt ... gtgctttcagCTATTAGTGAACCTTCACAATGGCAGATCTCAAGGAGAGGCTACTAGCACC
EST: TTATTGCAAATCCTGGGTATTACTCGATTTCTGTTGAAGAACACCCGGAG CTATTAGTGAACCTTCACAATGGCAGATCTCAAGGAGAGGCTACTAGCACC
genomic: TTATTGCAAATCCTGGGTATTACTCGATTTCTGTTGAAGAACACCCGGAGgtatgaatgt ... gtgctttcagCTATTAGTGAACCTTCACAATGGCAGATCTCAAGGAGAGGCTACTAGCACC
ctattgaaatcaatgggtggctgatgctcttacctcatatcatatgtgctttcagCTATTAGTGAACCTTCACAATGGCAGATCTCAAGGAGAGGCTACTAGCACCAAAACCTGCATCAGCTCTTAACGTAAGAGAGGTTTCCAATCGACCATCT
ctcttac putative branch site (score: 3)
tgctttc putative PPT
atatcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatcaatactgtgtcatatgcgtgaaacattttgtttgtataatgctattgaaatcaatgggtggctgatgctcttacctcatatcatatgtgctttcagCTATTAGTGAACCTTCACAATGGCAGATCTCAAGGAGAGGCTACTAGCACCAAAACCTGCATCAGCTCTTAACGTAAGAGAGGTTTCCAATCGACCATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG