1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtcagtcatatgatctcattcccaacccaattctgctttttaatttcattcttccaaatcctatgcatttcttaattgtgatgttttatcttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTACCCATGTGGACAGCAATTGCTCATTCACAATG
species | Glycine max |
transcript | GLYMA13G44910.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACT ATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTACEST: gi|193710246|gb|FK645506.1|FK645506
genomic: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTgtcagtcata ... ttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTAC
EST: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACT ATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAAEST: gi|18040649|gb|BM308934.1|BM308934
genomic: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTgtcagtcata ... ttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAA
EST: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACT ATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTACEST: gi|193476729|gb|FK439562.1|FK439562
genomic: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTgtcagtcata ... ttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTAC
EST: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACT ATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGAC
genomic: AGACTCTGAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCAGACACTgtcagtcata ... ttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGAC
tcattcttccaaatcctatgcatttcttaattgtgatgttttatcttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTACCCATGTGGACAGCAATTGCTCATTCACAATG
tcttaat putative branch site (score: 3)
ttttatcttcacctc putative PPT
atttcttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtcatatgatctcattcccaacccaattctgctttttaatttcattcttccaaatcctatgcatttcttaattgtgatgttttatcttcacctcagATTATGGCAGTCAAGAAGAATATCGAAGATGTACAAGGCAAAGACAATTACCCATGTGGACAGCAATTGCTCATTCACAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG