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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcatagaataaacataaaccttagtgtcatcatcttgtcattttactctctcttttttttgttactataaagctttgcaaattaatgcttactcattgtttcaattttccagGAAAGGTCAACCGAAGATAACATTCCCAGTTTTCATGCAAATTTTTATCCTAGCTCTTCTTGG

Basic information

species Glycine max
transcript GLYMA13G25890.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G25890.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv13s0084g00090.t01 (Vitis vinifera), 3'ss of exon 1
gttcatagaataaacataaaccttagtgtcatcatcttgtcattttactctctcttttttttgttactataaagctttgcaaattaatgcttactcattgtttcaattttccagGAAAGGTCAACCGAAGATAACATTCCCAGTTTTCATGCAAATTTTTATCCTAGCTCTTCTTGG
             |||| |     | ||  ||||    |  |   ||   | ||||   |  ||| |     |  |||    |||  | | |  |   | |||  || ||||||||| |  ||||| |||||||||||||  |||||||||||||| ||| |  | |||||||||||
-----------gtacattacatgaactgaaatca----gaaaaaatagcttttcttggatcagttccctcggaaatttattgattctttcatgtt---tttttttatgttccagGAAGGCGCAACCAAAGATAACATTCCGCGTTTTCATGCAAATATTTGTTTTGGCTCTTCTTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151397034|gb|EV266907.1|EV266907
EST:     CACGCTTTTGCCACCGCTGTCATCGCTCCTTTTGCCTTTATTTTTGAAAG                         GAAAGGTCAACCGAAGATAACATTCCCAGTTTTCATGCAAATTTTTATCCT
genomic: CACGCTTTTGCCACCGCTGTCATCGCTCCTTTTGCCTTTATTTTTGAAAGgttcatagaa ... aattttccagGAAAGGTCAACCGAAGATAACATTCCCAGTTTTCATGCAAATTTTTATCCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttactataaagctttgcaaattaatgcttactcattgtttcaattttccagGAAAGGTCAACCGAAGATAACATTCCCAGTTTTCATGCAAATTTTTATCCTAGCTCTTCTTGG
                            tgcttac  putative branch site (score: 2)
                                               ttttcc  putative PPT
                                     attgtttcaatttt  TA-rich tract