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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccttcttcttcttcttctacttcttctttttcgttttttgacactgcccttactcacgttaattgaacacagGGAGGACCTCATCAAACAGTGTTTACTGAAAGGCACTCACTTGGTTCAAGCTATCGCAGATGCCCTCTTTATCTTACCATCGACCGAAGATTTGGATGGA

Basic information

species Glycine max
transcript GLYMA13G23700.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192324138|gb|FK017869.1|FK017869
EST:     ATGGCTTTCGATTCCTATCACACCTTCCCTTCTCAACCATCTCTTTCCAG                         GGAGGACCTCATCAAACAGTGTTTACTGAAAGGCACTCACTTGGTTCAAGC
genomic: ATGGCTTTCGATTCCTATCACACCTTCCCTTCTCAACCATCTCTTTCCAGgtaccttctt ... ttgaacacagGGAGGACCTCATCAAACAGTGTTTACTGAAAGGCACTCACTTGGTTCAAGC
EST: gi|58017104|gb|CX703846.1|CX703846
EST:     ATGGCTTTCGATTCCTATCACACCTTCCCTTCTCAACCATCTCTTTCCAG                         GGAGGACCTCATCAAACAGTGTTTACTGAAAGGCACTCACTTGGTTCAAGC
genomic: ATGGCTTTCGATTCCTATCACACCTTCCCTTCTCAACCATCTCTTTCCAGgtaccttctt ... ttgaacacagGGAGGACCTCATCAAACAGTGTTTACTGAAAGGCACTCACTTGGTTCAAGC
EST: gi|23064026|gb|BU578799.1|BU578799
EST:     ATGGCTTTCGATTCCTATCACACCTTCCCTTCTCAACCATCTCTTTCCAG                         GGAGGACCTCATCAAACAGTGTTTACTGAAAGGTTTTTTCTTGGTTCAAGC
genomic: ATGGCTTTCGATTCCTATCACACCTTCCCTTCTCAACCATCTCTTTCCAGgtaccttctt ... ttgaacacagGGAGGACCTCATCAAACAGTGTTTACTGAAAGGCACTCACTTGGTTCAAGC
EST: gi|298178236|gb|HO023971.1|HO023971
EST:     ATGGCTTTCGATTCCTATCACACCTTCCCTTCTCAACCATCTCTTTCCAG                         GGAGGACCTCATCAAACAGTGTTTACTGAAAGGCACTCACTTGGTTCAAGC
genomic: ATGGCTTTCGATTCCTATCACACCTTCCCTTCTCAACCATCTCTTTCCAGgtaccttctt ... ttgaacacagGGAGGACCTCATCAAACAGTGTTTACTGAAAGGCACTCACTTGGTTCAAGC
EST: gi|254317804|gb|GR826788.1|GR826788
EST:     ATGGCTTTCGATTCCTATCACACCTTCCCTTCTCAACCATCTCTTTCCAG                         GGAGGACCTCATCAAACAGTGTTTACTGAAAGGCACTCACTTGGTTCAAGC
genomic: ATGGCTTTCGATTCCTATCACACCTTCCCTTCTCAACCATCTCTTTCCAGgtaccttctt ... ttgaacacagGGAGGACCTCATCAAACAGTGTTTACTGAAAGGCACTCACTTGGTTCAAGC
EST: gi|208070288|gb|GD869719.1|GD869719
EST:     ATGGCTTTCGATTCCTATCACACCTTCCCTTCTCAACCATCTCTTTCCAG                         GGAGGACCTCATCAAACAGTGTTTACTGAAAGGCACTCACTTGGTTCAAGC
genomic: ATGGCTTTCGATTCCTATCACACCTTCCCTTCTCAACCATCTCTTTCCAGgtaccttctt ... ttgaacacagGGAGGACCTCATCAAACAGTGTTTACTGAAAGGCACTCACTTGGTTCAAGC
EST: gi|6747619|gb|AW318132.1|AW318132
EST:     ATGGCTTTCGATTCCTATCACACCTTCCCTTCTCAACCATCTCTTTCCAG                         GGAGGACCTCATCAAACAGTGTTTACTGAAAGGCACTCACTTGGTTCAAGC
genomic: ATGGCTTTCGATTCCTATCACACCTTCCCTTCTCAACCATCTCTTTCCAGgtaccttctt ... ttgaacacagGGAGGACCTCATCAAACAGTGTTTACTGAAAGGCACTCACTTGGTTCAAGC
EST: gi|8827706|gb|BE211445.1|BE211445
EST:     ATGGCTTTCGATTCCTATCACACCTTCCCTTCTCAACCATCTCTTTCCAG                         GGAGGACCTCATCAAACAGTGTTTACTGAAAGGCACTCACTTGGTTCAAGC
genomic: ATGGCTTTCGATTCCTATCACACCTTCCCTTCTCAACCATCTCTTTCCAGgtaccttctt ... ttgaacacagGGAGGACCTCATCAAACAGTGTTTACTGAAAGGCACTCACTTGGTTCAAGC
EST: gi|192324119|gb|FK017850.1|FK017850
EST:     ATGGCTTTCGATTTCTATCACACCTTCCCTTCTCAACCATCTCTTTCCAG                         GGAGGACCTCATCAAACAGTGTTTACTGAAAGGCACTCACTTGGTTCAAGC
genomic: ATGGCTTTCGATTCCTATCACACCTTCCCTTCTCAACCATCTCTTTCCAGgtaccttctt ... ttgaacacagGGAGGACCTCATCAAACAGTGTTTACTGAAAGGCACTCACTTGGTTCAAGC
EST: gi|18848603|gb|BM567757.1|BM567757
EST:     ATGGCTTTCGATTCCTATCACACCTTCCCTTCTCAACCATCTCTTTCCAG                         GGAGGACCTCATCAAACAGTGTTTACTGAAAGGCACTCACTTGGTTCAAGC
genomic: ATGGCTTTCGATTCCTATCACACCTTCCCTTCTCAACCATCTCTTTCCAGgtaccttctt ... ttgaacacagGGAGGACCTCATCAAACAGTGTTTACTGAAAGGCACTCACTTGGTTCAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttcttctttttcgttttttgacactgcccttactcacgttaattgaacacagGGAGGACCTCATCAAACAGTGTTTACTGAAAGGCACTCACTTGGTTCAAGCTATCGCAGATGCCCTCTTTATCTTACCATCGACCGAAGATTTGGATGGA
                                         ttaattgaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaccttcttcttcttcttctacttcttctttttcgttttttgacactgcccttactcacgttaattgaacacagGGAGGACCTCATCAAACAGTGTTTACTGAAAGGCACTCACTTGGTTCAAGCTATCGCAGATGCCCTCTTTATCTTACCATCGACCGAAGATTTGGATGGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA