1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtggcctaattgctgtctccttgttgggatagaatgtttatgttatgtccatcagaccatttcttccactttttgatttgtaatttttggtttattacagCTATCAGAAATTGTAAAACAAGGTCAATTGGTGTCAGATGAAATTATTATTAGTTTATTGTCAAAGAGACTTGTTGCCGGGGAAGCTAAAGGCGATTTGG
species | Glycine max |
transcript | GLYMA13G19880.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGATCTCGTTCGCGACGAACTCACCTCCTCTGGCCCCCTTTCTTCCCAG CTATCAGAAATTGTAAAACAAGGTCAATTGGTGTCAGATGAAATTATTATTEST: gi|254338718|gb|GR850029.1|GR850029
genomic: GCGATCTCGTTCGCGACGAACTCACCTCCTCTGGCCCCCTTTCTTCCCAGgttttgttgt ... tttattacagCTATCAGAAATTGTAAAACAAGGTCAATTGGTGTCAGATGAAATTATTATT
EST: GCGATCTCGTTCGCGACGAACTCACCTCCTCTGGCCCCCTTTCTTCCCAG CTATCAGAAATTGTAAAACAAGGTCAATTGGTGTCAGATGAAATTATTATTEST: gi|254346337|gb|GR856059.1|GR856059
genomic: GCGATCTCGTTCGCGACGAACTCACCTCCTCTGGCCCCCTTTCTTCCCAGgttttgttgt ... tttattacagCTATCAGAAATTGTAAAACAAGGTCAATTGGTGTCAGATGAAATTATTATT
EST: GCGATCTCGTTCGCGACGAACTCACCTCCTCTGGCCCCCTTTCTTCCCAG CTATCAGAAATTGTAAAACAAGGTCAATTGGTGTCAGATGAAATTATTATTEST: gi|10231675|gb|BE800563.1|BE800563
genomic: GCGATCTCGTTCGCGACGAACTCACCTCCTCTGGCCCCCTTTCTTCCCAGgttttgttgt ... tttattacagCTATCAGAAATTGTAAAACAAGGTCAATTGGTGTCAGATGAAATTATTATT
EST: GCGATCTCGTTCGCGACGAACTCACCTCCTCTGGCCCCCTTTCTTCCCAG CTATCAGAAAATTGTAAAACAAGGTCAATTGGTGTCAGATGAAATTATTAT
genomic: GCGATCTCGTTCGCGACGAACTCACCTCCTCTGGCCCCCTTTCTTCCCAGgttttgttgt ... tttattacagCTATCAG-AAATTGTAAAACAAGGTCAATTGGTGTCAGATGAAATTATTAT
tgtccatcagaccatttcttccactttttgatttgtaatttttggtttattacagCTATCAGAAATTGTAAAACAAGGTCAATTGGTGTCAGATGAAATTATTATTAGTTTATTGTCAAAGAGACTTGTTGCCGGGGAAGCTAAAGGCGATTTGG
ttttgat putative branch site (score: 4)
tttttgatttgtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggcctaattgctgtctccttgttgggatagaatgtttatgttatgtccatcagaccatttcttccactttttgatttgtaatttttggtttattacagCTATCAGAAATTGTAAAACAAGGTCAATTGGTGTCAGATGAAATTATTATTAGTTTATTGTCAAAGAGACTTGTTGCCGGGGAAGCTAAAGGCGATTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - tgctgtc
- - - - - - - - - - -tgttggg
- - - - - - - - - - - - - - - - - - - - tgttatg
- - - - - - - - - - - - - - - - - - - - - - - -tccatca