1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttttcccccatctctctctctctcacacacatactttctctcatgaaattcaatttaactttgtgaattttctcgtttgaagcagcagTGCTCTGGGGTGGAAACATTCCTCCTTGTTCGTACAATCTAATAATGGCTTTAACGTGGCTTCGCCTCCTTTCAAACATAAACCGCCACGCTCCTCCAAG
species | Glycine max |
transcript | GLYMA12G35880.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCTACTTCCATTAACAGCAGEST: gi|213595140|gb|DB972074.1|DB972074
genomic: GGCTACTTCCATT-A-A-CAGgttttccccc ... gaagcagc
EST: GAATCGCTTTCTTTGCTCTTTCCCAACCCAATGGCTACTTCCATTAACAGCAGEST: gi|17401548|gb|BM178330.1|BM178330
genomic: GAATCGCTTTCTTTGCTCTTTCCCAACCCAATGGCTACTTCCATT-A-A-CAGgttttccccc ... gaagcagc
EST: GAATCGCTTTCTTTGCTCTTTCCCAACCCAATGGCTACTTCCATTAACAG TGCTCTGGGGTGGAAACATTCCTCCTTGTTCGTACAATCTAATAATGGCTTEST: gi|209720358|gb|BW672166.1|BW672166
genomic: GAATCGCTTTCTTTGCTCTTTCCCAACCCAATGGCTACTTCCATTAACAGgttttccccc ... gaagcagcagTGCTCTGGGGTGGAAACATTCCTCCTTGTTCGTACAATCTAATAATGGCTT
EST: GGCTACTTCCATTAACAGCAG
genomic: GGCTACTTCCATT-A-A-CAGgttttccccc ... gaagcagc
ctttctctcatgaaattcaatttaactttgtgaattttctcgtttgaagcagcagTGCTCTGGGGTGGAAACATTCCTCCTTGTTCGTACAATCTAATAATGGCTTTAACGTGGCTTCGCCTCCTTTCAAACATAAACCGCCACGCTCCTCCAAG
atttaac putative branch site (score: 3)
aaattcaatttaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttcccccatctctctctctctcacacacatactttctctcatgaaattcaatttaactttgtgaattttctcgtttgaagcagcagTGCTCTGGGGTGGAAACATTCCTCCTTGTTCGTACAATCTAATAATGGCTTTAACGTGGCTTCGCCTCCTTTCAAACATAAACCGCCACGCTCCTCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC