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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcgtgatattggaatttaagaatacgtgcatcgcggaatacttgtgttttagttagttccagtttattttgttgagcttggatataattaggttaatagcaataaataatctaataagcaattaggataatcattattatgtgtacacttgttgtagGTGCTAGGAATAATTATATCCCCTACAAGGGAGCTATCAACTCAAATATATCATGTTGCACAGTCCTTCATTTCAACATTGATGAATGTTAAGTCCATGC

Basic information

species Glycine max
transcript GLYMA11G35640.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298195638|gb|HO044029.1|HO044029
EST:     CTCTCGTCGAGATTCTACGTCGCTCCTCTTCTCATCCCAAGCCTCACAAG                         GTGCTAGGAATAATTATATCCCCTACAAGGGAGCTATCAACTCAAATATAT
genomic: CTCTCGTCGAGATTCTACGTCGCTCCTCTTCTCATCCCAAGCCTCACAAGgtagcgtgat ... cttgttgtagGTGCTAGGAATAATTATATCCCCTACAAGGGAGCTATCAACTCAAATATAT
EST: gi|41146019|gb|CK606230.1|CK606230
EST:     CTCTCGTCGAGATTCTACGTCGCTCCTCTTCTCATCCCAAGCCTCACAAG                         GTGCTAGGAATAATTATATCCCCTACAAGGGAGCTATCAACTCAAATATAT
genomic: CTCTCGTCGAGATTCTACGTCGCTCCTCTTCTCATCCCAAGCCTCACAAGgtagcgtgat ... cttgttgtagGTGCTAGGAATAATTATATCCCCTACAAGGGAGCTATCAACTCAAATATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaataatctaataagcaattaggataatcattattatgtgtacacttgttgtagGTGCTAGGAATAATTATATCCCCTACAAGGGAGCTATCAACTCAAATATATCATGTTGCACAGTCCTTCATTTCAACATTGATGAATGTTAAGTCCATGC
      atctaat  putative branch site (score: 3)
                 aattaggataatcatt  TA-rich tract