Sequence
atgc intronic sequence ATGC exonic sequence...aatgtccataagtgtataagtcctacttcttgcatgtagtggttatgtaataggataaactaaatgtgtcaattaatcttatttatatatgcatgtgcagGAGCTTCCAATTCATCAAAGAGCAGATGCTGTGAGTAGTTTAGTTTATGAGGCAAATGCAAGAGTTAGAGACCCTGTGTATGGATGTGTTGGAGCCATAT
Basic information
species | Glycine max |
transcript | GLYMA11G29450.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G29450.1 (Glycine max), 3'ss of exon 1
lower sequence: AT2G30130.1 (Arabidopsis thaliana), 3'ss of exon 1
aatgtccataagtgtataagtcctacttcttgcatgtagtggttatgtaataggataaactaaatgtgtcaattaatcttat--ttatatatgcatgtgcagGAGCTTCCAATTCATCAAAGAGCAGATGCTGTGAGTAGTTTAGTTTATGAGGCAAATGCAAGAGTTAGAGACCCTGTGTATGGATGTGTTGGAGCCATAT
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--tgcttgataaactactatatggacatatatgaatcagaaattgtgctacaaaatatgttctatatagaaaatgtttacatgattatttaaattgtcacagGAGCTACCAGTTCATCAAAGAGCTGACGCGGTGAATAGTCTGGTTTTTGAAGCAAACGCAAGAGTAAGAGATCCGGTCTACGGCTGCGTAGGAGCAATCT
upper sequence: GLYMA11G29450.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv06s0004g07200.t01 (Vitis vinifera), 3'ss of exon 1
--------------aatgtccataagtgtataagtcctacttcttgcatg-tagtggttatgtaat---aggataaactaaatgtg----tcaattaatcttatttatatatgcatgtgcagGAGCTTCCAATTCATCAAAGAGCAGATGCTGTGAGTAGTTTAGTTTATGAGGCAAATGCAAGAGTTAGAGACCCTGTGTATGGATGTGTTGGAGCCATAT
||||| | ||| | | || | || ||| ||| || || ||||||| || | | || |||| || | | ||| | ||||||||||| |||| || || |||||| ||||| |||||||||||||| |||||||||||||| ||||||| || |||||||||||||| || || |
gtatccatcttctcttcgtccaatccatcttcagttcctccactggtttgatagcttaaatggaacctcagtgtaaactagattttcttttttctttttcttgttgtttgttacatatacagGAGCTTCCCGTTCACCAGAGGATAGATGCAGTGAGCAGTTTAGTTTATGAAGCAAATGCAAGAGTGCGAGACCCGGTTTATGGATGTGTTGGGGCGATTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtaataggataaactaaatgtgtcaattaatcttatttatatatgcatgtgcagGAGCTTCCAATTCATCAAAGAGCAGATGCTGTGAGTAGTTTAGTTTATGAGGCAAATGCAAGAGTTAGAGACCCTGTGTATGGATGTGTTGGAGCCATAT
ataaactaaatgtgtc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatgtccataagtgtataagtcctacttcttgcatgtagtggttatgtaataggataaactaaatgtgtcaattaatcttatttatatatgcatgtgcagGAGCTTCCAATTCATCAAAGAGCAGATGCTGTGAGTAGTTTAGTTTATGAGGCAAATGCAAGAGTTAGAGACCCTGTGTATGGATGTGTTGGAGCCATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - ctacttc
- - - - - - - - - - - - - - - -gcatgta
- - - - - - - - - - - - - - - - - - - - ggttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - -gataaac