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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcatcaacattttatgctctaacgccataaatcgaacatttttcgtgcttttcatcattacttggatgtcaattttgaatttttgtagctgcgcagcaagtgggtacactcagtttttttctctggtgaaatgtatttgtattttgcagcatgtatatatattcactttgtttaactatttgtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTTGATGTGAAGGCTGGCTTTTTCAGAAATTACCTGCTTCCTATGGGAAAAG

Basic information

species Glycine max
transcript GLYMA11G19820.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G19820.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G44890.1 (Arabidopsis thaliana), 3'ss of exon 1
gtagcatcaacattttatgctctaacgccataaatcgaacatttttcgtgcttttcatcattacttggatgtcaattttgaatttttgtagctgcgcagcaagtgggtacactcagtttttttctctggtgaaatgtatttgtattttgcagcatgtatatatattcactttgtttaactatttgtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTTGATGTGAAGGCTGGCTTTTTCAGAAATTACCTGCTTCCTATGGGAAAAG
                                                                                  ||   |||| ||   |  || ||| |  |  |  | ||| | | | | |||||| | |       || | ||   ||     |  |  ||||||      ||      | || | |||||||| || |||||| |  || | || |||||||||||| | ||||||||||| ||||| ||||||||||| | |||  | ||||  ||||| |
--------------------------------------------------------------------------------gtttcaagtag-tgaagataaattggtttgaagctttgtttctgtgtagagaaatggagtaag----tgaaacactaatg---gtaaatcttgttttgtgtctt------taagGTAATTTTGAAAGAGGATGTGACGGATTTGGGTAAGCAAGGGCAATTACTTGATGTGAAAGCTGGATTTTTCAGAAACTTCCTCTTGCCTACTGGAAAGG

upper sequence: GLYMA11G19820.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv06s0061g00770.t01 (Vitis vinifera), 3'ss of exon 1
gtagcatcaacattttatgctctaacgccataaatcgaacatttttcgtgcttttcatcattacttggatgtcaattttgaatttttgtagctgcgcagcaagtgggtacactcagtttttttctctggtgaaatgtatttgtattttgcagcatgtatatatattcactttgtttaactatttgtgaaat-cagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTTGATGTGAAGGCTGGCTTTTTCAGAAATTACCTGCTTCCTATGGGAAAAG
                                                                                   | ||||   || ||  |     | |  |    | |||| ||       ||| |   |  || ||  |||| |     | || |    |||||    | |  ||| |   ||||| ||  ||||||| ||||| ||  |  | |||||| |||||||||| |||||||||||||| || | || ||||||||| || |  || ||||| |  |
-----------------------------------------------------------------------------------tcttgt--ttgggcttcctaaagttgaat--gggttttctcaacaaccaaacggggtgttagtt-acagcct-----tgtaatgggattgtt--gttgtgggtggatcacagATAATCCTGAAGGAGGATGTAGCAGAGCTGGGAAAGAAAGGGCAACTACTTGATGTGAAGGCGGGATATTACAGAAATTATCTCCAACCCATGGGCATGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151398344|gb|EV268215.1|EV268215
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|5760626|gb|AI965989.1|AI965989
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTGCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|298181314|gb|HO022753.1|HO022753
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTTTGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|9902786|gb|BE611754.1|BE611754
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|58024346|gb|CX711087.1|CX711087
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|58017919|gb|CX704661.1|CX704661
EST:     ATGTACGC-TTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|31561330|gb|CD487168.1|CD487168
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATCATTGCGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|7686157|gb|AW756805.1|AW756805
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|120494977|gb|EH223144.1|EH223144
EST:     CAAAAGAAGGCAAAG-AACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: CAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|10847510|gb|BF071557.1|BF071557
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|298192960|gb|HO033394.1|HO033394
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|298182190|gb|HO026365.1|HO026365
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAGAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|298169407|gb|HO020767.1|HO020767
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|298174319|gb|HO017655.1|HO017655
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTACTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|7692630|gb|AW760732.1|AW760732
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|10232731|gb|BE801619.1|BE801619
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|192329306|gb|FK020225.1|FK020225
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAGCTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|5508879|gb|AI855437.1|AI855437
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|13479522|gb|BG508865.1|BG508865
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|208338534|gb|GE137792.1|GE137792
EST:     CAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: CAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|120529435|gb|EH257569.1|EH257569
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|151393442|gb|EV263317.1|EV263317
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|5760324|gb|AI965751.1|AI965751
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|192323328|gb|FK018979.1|FK018979
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGACTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|207737579|gb|GD715581.1|GD715581
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|207796404|gb|GD767864.1|GD767864
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|10843800|gb|BF067055.1|BF067055
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|207834678|gb|GD806397.1|GD806397
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|298175487|gb|HO018198.1|HO018198
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|23063923|gb|BU578697.1|BU578697
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|58015022|gb|CX701764.1|CX701764
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|298183049|gb|HO028312.1|HO028312
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|209725248|gb|BW672723.1|BW672723
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|298195310|gb|HO043838.1|HO043838
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|9899851|gb|BE608819.1|BE608819
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|10232284|gb|BE801172.1|BE801172
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|13181428|gb|BG352698.1|BG352698
EST:     ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAG                         ATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT
genomic: ATGTACGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGAAAGgtagcatcaa ... gtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtattttgcagcatgtatatatattcactttgtttaactatttgtgaaatcagATTATTTTGAAGGAAGATGTGGCTTATGTAGGAAAGCAAGGGCAACTTCTTGATGTGAAGGCTGGCTTTTTCAGAAATTACCTGCTTCCTATGGGAAAAG
                                 gtttaac  putative branch site (score: 3)
                 tatatatattcacttt  TA-rich tract