1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgtggggttagctcaattttatacccaactattaactattagtctggtgcttaagtgtgtctatgaatgttgcatgatcgtaatttgtgtgtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATTTCATCAATGGGTTCTGAGAGAGTTGGGTATTTGGATGATCCTAACGTTT
species | Glycine max |
transcript | GLYMA11G13100.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG CCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATTEST: gi|31561814|gb|CD487652.1|CD487652
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG CCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATTEST: gi|298196651|gb|HO041394.1|HO041394
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG CCTGCTCTGCCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATTEST: gi|151399130|gb|EV269001.1|EV269001
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG CCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATTEST: gi|298188836|gb|HO035529.1|HO035529
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG CCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATTEST: gi|208153284|gb|GD948765.1|GD948765
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: TCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTTG CCTGCTCTGTCGATTGGCAEST: gi|6666082|gb|AW277541.1|AW277541
genomic: TCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTT-Ggtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCA
EST: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG CCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATTEST: gi|192298008|gb|FG993242.1|FG993242
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG CCTACTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATTEST: gi|298199338|gb|HO042701.1|HO042701
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG CCTGCTCTGTCGATTGGCAATGTGGGGCAGCTGGTTGCAGATCTTTTGATTEST: gi|18039874|gb|BM308168.1|BM308168
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG CCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATTEST: gi|213596494|gb|DB962054.1|DB962054
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG CCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATTEST: gi|208082193|gb|GD882999.1|GD882999
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG CCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGEST: gi|192295265|gb|FG986984.1|FG986984
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTG
EST: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG CCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATTEST: gi|19052856|gb|BM731523.1|BM731523
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG CCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATTEST: gi|192298714|gb|FG988595.1|FG988595
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG CCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATTEST: gi|151400466|gb|EV270280.1|EV270280
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG CCTGCTCTGTCGATTGGCAATGTGGGACAGCTAGTTGCAGATCTTTTGATTEST: gi|298174081|gb|HO017417.1|HO017417
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACCTTGATTTTG CCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
ggtgcttaagtgtgtctatgaatgttgcatgatcgtaatttgtgtgtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATTTCATCAATGGGTTCTGAGAGAGTTGGGTATTTGGATGATCCTAACGTTT
tgttttc CT-rich tract
taatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtggggttagctcaattttatacccaactattaactattagtctggtgcttaagtgtgtctatgaatgttgcatgatcgtaatttgtgtgtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATTTCATCAATGGGTTCTGAGAGAGTTGGGTATTTGGATGATCCTAACGTTT
- tggggtt
- - - - - - - - - - - - ccaacta
- - - - - - - - - - - - - - - - - - - - - -ctggtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgtgt