1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gacttacatcgatgtttctttaatatgcataaggagaaggtatgtgtgtgtccttcaatatgcattttgttctaaaatggatgtctgaattcatttctagGATCCCTGGGAGTGAGTGAGAGGAGTTCAGGAAAAAATAAGGTTGGTAAGAAGGGAGAACTTTCAGTTTCAAGGATGGATTTTGCAGGGCTTGACTTTGC
species | Glycine max |
transcript | GLYMA11G12160.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAAGTACAAGCAGAATAAAGCCGTTGCAGCTGTTACTGAAACAACTCAAG GATCCCCTGG-AGTGAGTGAGAGGAGTTCAGGAAANAATAAGGTTGGTAAGEST: gi|19348632|gb|BM893164.1|BM893164
genomic: AAAGTACAAGCAGAATAAAGCCGTTGCAGCTGTTACTGAAACAACTCAAGgtaataataa ... tcatttctagGATCCC-TGGGAGTGAGTGAGAGGAGTTCAGGAAAAAATAAGGTTGGTAAG
EST: AAAGTACAAGCAGAATAAAGCCGTTGCAGCTGTTACTGAAACAACTCAAG GATCCCTGGGAGTGAGTGAGAGGAGTTCAGGAAAAAATAAGGTTGGTAAGA
genomic: AAAGTACAAGCAGAATAAAGCCGTTGCAGCTGTTACTGAAACAACTCAAGgtaataataa ... tcatttctagGATCCCTGGGAGTGAGTGAGAGGAGTTCAGGAAAAAATAAGGTTGGTAAGA
gtgtgtccttcaatatgcattttgttctaaaatggatgtctgaattcatttctagGATCCCTGGGAGTGAGTGAGAGGAGTTCAGGAAAAAATAAGGTTGGTAAGAAGGGAGAACTTTCAGTTTCAAGGATGGATTTTGCAGGGCTTGACTTTGC
ttctaaa putative branch site (score: 2)
ttcatttct putative PPT
attttgttctaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacttacatcgatgtttctttaatatgcataaggagaaggtatgtgtgtgtccttcaatatgcattttgttctaaaatggatgtctgaattcatttctagGATCCCTGGGAGTGAGTGAGAGGAGTTCAGGAAAAAATAAGGTTGGTAAGAAGGGAGAACTTTCAGTTTCAAGGATGGATTTTGCAGGGCTTGACTTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - atatgca
- - - - - - - - - - - - -tgcataa
- - - - - - - - - - - - - - - - - - - - - -gtgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - tccttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggatgt