Sequence
atgc intronic sequence ATGC exonic sequence...attcttatatgatgaaatattagcattattagcttatttttatcacaatgcatgcccttcatatatattgtgtacttcatttctatgaaacattggacagGGCATGGCAAAAGATGAAAAGCTGAGCCAATCGCATGAAACATGGAAGCAAGAGATTGCAAGAAGCCAATCCCAAGTGGATGCATTGCAAAAAGAACTTA
Basic information
species | Glycine max |
transcript | GLYMA11G08100.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192295243|gb|FG986962.1|FG986962EST: CGTTATCTTCATTCTACTCAATCGATCCTCACTTTTTCTTGTCAAAGCAG GGCATGGCAAAAGATGAAAAGCTGAGCCAATCGCATGAAACATGGAAGCAA
genomic: CGTTATCTTCATTCTACTCAATCGATCCTCACTTTTTCTTGTCAAAGCAGgtgcctcctc ... cattggacagGGCATGGCAAAAGATGAAAAGCTGAGCCAATCGCATGAAACATGGAAGCAA
EST:
gi|192294277|gb|FG986366.1|FG986366EST: CTTGTCAAAGCAG GGCATGGCAAAAGATGAAAAGCTGAGCCAATCGCATGAAACATGGAAGCAA
genomic: CTTGTCAAAGCAGgtgcctcctc ... cattggacagGGCATGGCAAAAGATGAAAAGCTGAGCCAATCGCATGAAACATGGAAGCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caatgcatgcccttcatatatattgtgtacttcatttctatgaaacattggacagGGCATGGCAAAAGATGAAAAGCTGAGCCAATCGCATGAAACATGGAAGCAAGAGATTGCAAGAAGCCAATCCCAAGTGGATGCATTGCAAAAAGAACTTA
ttcatatatattgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attcttatatgatgaaatattagcattattagcttatttttatcacaatgcatgcccttcatatatattgtgtacttcatttctatgaaacattggacagGGCATGGCAAAAGATGAAAAGCTGAGCCAATCGCATGAAACATGGAAGCAAGAGATTGCAAGAAGCCAATCCCAAGTGGATGCATTGCAAAAAGAACTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
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- - - - - - - - - - - - - - - - - - - - - -cacaatg
- - - - - - - - - - - - - - - - - - - - - - - - - catgccc