1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaactgctgacctaatttcttgatttgaatttcgattcatcgtttgattcagggttaattatgttctgattactggtttcgtttcttattaagtatcaactgttgcgtaattggaaatttatgttcccctttatgacgattttgatttgtattttgtgaaaatatgttaagTTGGAGGAAGGAAGTCGGGCAGAGCATTTGCAAGCACAGAAATGTCGAGTGCGTCTCGATCACTTAGAATCTGCTGATGCAGAAAACATGTCAGAATGGA
species | Glycine max |
transcript | GLYMA10G43910.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCAACCACCTTAACTCCCTTGTCTCCCGCCTGCAAGGGCTCAAACGAAAG TTGGAGGAAGGAAGTCGGGCAGAGCATTTGCAAGCACAGAAATGTCGAGTGEST: gi|14259206|gb|BG882114.1|BG882114
genomic: TCAACCACCTTAACTCCCTTGTCTCCCGCCTGCAAGGGCTCAAACGAAAGgtaactgctg ... atatgttaagTTGGAGGAAGGAAGTCGGGCAGAGCATTTGCAAGCACAGAAATGTCGAGTG
EST: TCAACCACCTTAACTCCCTTGTCTCCCGCCTGCAAGGGCTCAAACGAAAG TTGGAGGAAGGAAGTCGGGCAGAGCATTTGCAAGCACAGAAATGTCGAGTG
genomic: TCAACCACCTTAACTCCCTTGTCTCCCGCCTGCAAGGGCTCAAACGAAAGgtaactgctg ... atatgttaagTTGGAGGAAGGAAGTCGGGCAGAGCATTTGCAAGCACAGAAATGTCGAGTG
atttatgttcccctttatgacgattttgatttgtattttgtgaaaatatgttaagTTGGAGGAAGGAAGTCGGGCAGAGCATTTGCAAGCACAGAAATGTCGAGTGCGTCTCGATCACTTAGAATCTGCTGATGCAGAAAACATGTCAGAATGGA
ttttgat putative branch site (score: 4)
attttgatttgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactgctgacctaatttcttgatttgaatttcgattcatcgtttgattcagggttaattatgttctgattactggtttcgtttcttattaagtatcaactgttgcgtaattggaaatttatgttcccctttatgacgattttgatttgtattttgtgaaaatatgttaagTTGGAGGAAGGAAGTCGGGCAGAGCATTTGCAAGCACAGAAATGTCGAGTGCGTCTCGATCACTTAGAATCTGCTGATGCAGAAAACATGTCAGAATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT