1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttgaaatttgtttcaggcatcctttttatttttttaataatggcattccaactctcaaatattcaaaattttaaaatgaagtgctcttatttctgtctagCTTTCTCTCTGGAAGCCGAAATGGAAGGTTCAGCTATGGATATTCCAGTTTCAAGGGTAAAAGGTCATCAATGGAGGATTTCTTTGAGACCAAAATATCA
species | Glycine max |
transcript | GLYMA10G43810.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTGATGTCCTCCAAGGATCACGATTCTCTCTTCAGCGGTGGCGGCATCAG CTTTCTCTCTGGAAGCCGAAATGGAAGGTTCAGCTATGGATATTCCAGTTTEST: gi|298180459|gb|HO022012.1|HO022012
genomic: GTGATGTCCTCCAAGGATCACGATTCTCTCTTCAGCGGTGGCGGCATCAGgtgcatattt ... ttctgtctagCTTTCTCTCTGGAAGCCGAAATGGAAGGTTCAGCTATGGATATTCCAGTTT
EST: GTGATGTCCTCCAAGGATCACGATTCTCTCTTCAGCGGTGGCGGCATCAG CTTTCTCTCTGGAAGCCGAAATGGAAGGTTCAGCTATGGATATTCCAGTTTEST: gi|207834145|gb|GD808958.1|GD808958
genomic: GTGATGTCCTCCAAGGATCACGATTCTCTCTTCAGCGGTGGCGGCATCAGgtgcatattt ... ttctgtctagCTTTCTCTCTGGAAGCCGAAATGGAAGGTTCAGCTATGGATATTCCAGTTT
EST: CGGTGGCGGCATCAG CTTTCTCTCTGGAAGCCGAAATGGAAGGTTCAGCTATGGATATTCCAGTTTEST: gi|298191566|gb|HO039045.1|HO039045
genomic: CGGTGGCGGCATCAGgtgcatattt ... ttctgtctagCTTTCTCTCTGGAAGCCGAAATGGAAGGTTCAGCTATGGATATTCCAGTTT
EST: GTGATGTCCTCCAAGGATCACGATTCTCTCTTCAGCGGTGGCGGCATCAG CTTTCTCTCAGGAAGCCGAAATGGAAGGTTCAGCTATGGATATTCCAGTTT
genomic: GTGATGTCCTCCAAGGATCACGATTCTCTCTTCAGCGGTGGCGGCATCAGgtgcatattt ... ttctgtctagCTTTCTCTCTGGAAGCCGAAATGGAAGGTTCAGCTATGGATATTCCAGTTT
ttccaactctcaaatattcaaaattttaaaatgaagtgctcttatttctgtctagCTTTCTCTCTGGAAGCCGAAATGGAAGGTTCAGCTATGGATATTCCAGTTTCAAGGGTAAAAGGTCATCAATGGAGGATTTCTTTGAGACCAAAATATCA
ctcttatttctgtct CT-rich tract
tctcaaatattcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgaaatttgtttcaggcatcctttttatttttttaataatggcattccaactctcaaatattcaaaattttaaaatgaagtgctcttatttctgtctagCTTTCTCTCTGGAAGCCGAAATGGAAGGTTCAGCTATGGATATTCCAGTTTCAAGGGTAAAAGGTCATCAATGGAGGATTTCTTTGAGACCAAAATATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT