Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208031582|gb|GD830390.1|GD830390EST: AAGCGAAGAGGCGCAGCCGTAGCAGTAACTCGTGGAATTGCTAGCAATGG CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGTTGA
genomic: AAGCGAAGAGGCGCAGCCGTAGCAGTAACTCGTGGAATTGCTAGCAATGGgtaatttccc ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGTTGA
EST:
gi|208194745|gb|GD993012.1|GD993012EST: AAGCGAAGAGGCGCAGCCGTAGCAGTAACTCGTGGAATTGCTAGCAATGG CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGTTGA
genomic: AAGCGAAGAGGCGCAGCCGTAGCAGTAACTCGTGGAATTGCTAGCAATGGgtaatttccc ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGTTGA
EST:
gi|193583135|gb|FK540589.1|FK540589EST: AAGCGAAGAGGCGCAGCCGTAGCAGTAACTCGTGGAATTGCTAGCAATGG CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGTTGA
genomic: AAGCGAAGAGGCGCAGCCGTAGCAGTAACTCGTGGAATTGCTAGCAATGGgtaatttccc ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGTTGA
EST:
gi|193322951|gb|FK292029.1|FK292029EST: AAGCGAAGAGGCGCAGCCGTAGCAGTAACTCGTGGAATTGCTAGCAATGG CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGTTGA
genomic: AAGCGAAGAGGCGCAGCCGTAGCAGTAACTCGTGGAATTGCTAGCAATGGgtaatttccc ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGTTGA
EST:
gi|4288616|gb|AI441358.1|AI441358EST: AAGCGAAGAGGCGCAGCCGTAGCAGTAACTCGTGGAATTGCTAGCAATGG CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGTTGA
genomic: AAGCGAAGAGGCGCAGCCGTAGCAGTAACTCGTGGAATTGCTAGCAATGGgtaatttccc ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGTTGA
EST:
gi|10847023|gb|BF069793.1|BF069793EST: AAGCGAAGAGGCGCAGCCGTAGCAGTAACTCGTGGAATTGCTAGCAATGG CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGTTGA
genomic: AAGCGAAGAGGCGCAGCCGTAGCAGTAACTCGTGGAATTGCTAGCAATGGgtaatttccc ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGTTGA
EST:
gi|208179832|gb|GD978441.1|GD978441EST: AGCGAAAGAGGCGCAGCCGTAGCAGTAACTCGTGGAATTGCTAGCAATGG CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGTTGA
genomic: AGCG-AAGAGGCGCAGCCGTAGCAGTAACTCGTGGAATTGCTAGCAATGGgtaatttccc ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGTTGA
EST:
gi|17400281|gb|BM177063.1|BM177063EST: AGTAACTCGTGGAATTGCTAGCAATGG CGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGTTGA
genomic: AGTAACTCGTGGAATTGCTAGCAATGGgtaatttccc ... tgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGTTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggttcgtttttggtttggattggttgtttgattgtttgtgtttgtgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGTTGAATCAGCTGAAGGACCTCAAGGCCGAGCTTGCCTTGCTTCGTGTTGCTAA
gtttgat putative branch site (score: 5)
tttgatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatttcccgaaccattattattgtttctgtgttcgttggttcgtttttggtttggattggttgtttgattgtttgtgtttgtgttgtgcagCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGTTGAATCAGCTGAAGGACCTCAAGGCCGAGCTTGCCTTGCTTCGTGTTGCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT