1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaataataatattacattgtaaatagctactgtttaatgtgagtgcgagatttttgttttaattgtttatgtgttccgtgatatatattcagTCAAGACAATGGTGATGCTCCTAATACAAATACAAAGATTTATGTTGGAGGAATTCCCTATTATTCAACTGAGGATGATATTCGAAGTTATTTTGAAAGC
species | Glycine max |
transcript | GLYMA10G43660.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGGAAATGCCAGAGGCTACAGAGTTAACCAAGACCAATACAACTACCAG TCAAGACAATGGTGATGCTCCTAATACAAATACAEST: gi|15812336|gb|BI784611.1|BI784611
genomic: GGGGAAATGCCAGAGGCTACAGAGTTAACCAAGACCAATACAACTACCAGgtaataataa ... atatattcagTCAAGACAATGGTGATGCTCCTAATACAAATACA
EST: GGGGAAATGCCAGAGGCTACAGAGTTAACCAAGACCAATACAACTACCAG TCAAGACAATGGTGATGCTCCTAATACAAATACAAAGATTTATGTTGGAGGEST: gi|15812349|gb|BI784624.1|BI784624
genomic: GGGGAAATGCCAGAGGCTACAGAGTTAACCAAGACCAATACAACTACCAGgtaataataa ... atatattcagTCAAGACAATGGTGATGCTCCTAATACAAATACAAAGATTTATGTTGGAGG
EST: GGGGAAATGCCAGAGGCTACAGAGTTAACCAAGACCAATACAACTACCAG TCAAGACAATGGTGATGCTCCTAATACAAATACAAAGATTTATGTTGGAGGEST: gi|120496730|gb|EH224897.1|EH224897
genomic: GGGGAAATGCCAGAGGCTACAGAGTTAACCAAGACCAATACAACTACCAGgtaataataa ... atatattcagTCAAGACAATGGTGATGCTCCTAATACAAATACAAAGATTTATGTTGGAGG
EST: GGGGAAATGCCAGAGGCTACAGAGTTAACCAAGACCAATACAACTACCAG TCAAGACAATGGTGATGCTCCTAATACAAATACAAAGATTTATGTTGGAGG
genomic: GGGGAAATGCCAGAGGCTACAGAGTTAACCAAGACCAATACAACTACCAGgtaataataa ... atatattcagTCAAGACAATGGTGATGCTCCTAATACAAATACAAAGATTTATGTTGGAGG
tgtgagtgcgagatttttgttttaattgtttatgtgttccgtgatatatattcagTCAAGACAATGGTGATGCTCCTAATACAAATACAAAGATTTATGTTGGAGGAATTCCCTATTATTCAACTGAGGATGATATTCGAAGTTATTTTGAAAGC
ttttaat putative branch site (score: 3)
agatttttgttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataataatattacattgtaaatagctactgtttaatgtgagtgcgagatttttgttttaattgtttatgtgttccgtgatatatattcagTCAAGACAATGGTGATGCTCCTAATACAAATACAAAGATTTATGTTGGAGGAATTCCCTATTATTCAACTGAGGATGATATTCGAAGTTATTTTGAAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG