Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattcctcttcctctcttcactctacaccacttgttctctttcaaattctcgtattcttaatgtgttttctctgtttcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGCAAGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACA

Basic information

species Glycine max
transcript GLYMA10G32580.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32580.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os04g43540.1 (Oryza sativa), 3'ss of exon 1
---gtgattcctcttcctctcttcactctacaccacttgttctctttcaaattctcgtattcttaatgtgttttctctgtttcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGCAAGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACA
   | ||    ||      ||||  | |  |  | | |       | |  || | ||  || ||| |||| ||   ||||        ||||| |||||||||| ||| ||||||||| |||| || |   | |||||||||||||| || ||| | ||||||||||| ||||| ||| | ||||||||||
gtagggagctgtcgcgaaatctt-gcccgtcgtctcgtcggtatgtgctgatgcgcgcgttgttactgtgcttgtgctgtg-------cagCCGTTCAAGAGGTTCGTGGAGATCGGGCGGGTGGCCCTGGTGAACTACGGCAAGGACTACGGCCGCCTCGTCGTCATTGTCGATGTCGTCGACCAGAACA

upper sequence: GLYMA10G32580.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os02g40880.1 (Oryza sativa), 3'ss of exon 1
----------------------------gtgattcctcttcctctcttcactctacaccacttgttctctttcaaatt---ctcgtattcttaatgtg---ttttctctgtttcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGCAAGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACA
                             ||   ||  | ||  ||               | ||  |  ||   |||   | ||| |  || |   |   |||| | ||  | | || ||||| |||||||||| ||| ||||||||| |||| || |   | |||||||||||||| || ||| | |||||||||||||| || ||| | ||||||||| 
gtaggtggatcgccgtgggctcgtcgtcttgccgccgttgccgttccggtggtggtggtggtggtggtgctttggattgcgcgcgtgtgtttgaccggggtttttttgtgcctttcgtgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGGGTGGCCCTGGTGAACTACGGCAAGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACC

upper sequence: GLYMA10G32580.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G028883_T01 (Zea mays), 3'ss of exon 1
----gtgattcctcttcctctcttcactctacaccacttgttctctttcaaattctcgt--attcttaatgtgt---tttctctgtttc--ttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGCAAGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACA
     ||  |||   |    |   | |   |       |  ||| |||    || | ||    |  | ||| |    | |   |||| |  ||   ||||| |||||||||| ||| ||||||||| | || || |   | |||||||||||||| |||||| | ||||||||||||||||||||| | ||||||||||
gtatatgtctcccgatatcattcccgcatcaaggggtcttgtctttttgttgttgttgttggctaatgatgcgcacctgttgatgttgcggttccgcagCCGTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGCAAGGAGTATGGCCGCCTCGTCGTCATCGTCGACGTCGTCGACCAGAACA

upper sequence: GLYMA10G32580.1 (Glycine max), 3'ss of exon 1
lower sequence: AT4G27090.1 (Arabidopsis thaliana), 3'ss of exon 1
-----gtgattcctcttcctctcttcactctacaccacttgt-tctctttcaaattctcgtatt------cttaatgtgttttctctgtttcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGCAAGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACA
      | |  | | |  |  |||  |        |  |||| | |   | | | ||     ||       ||||| | || |     ||  ||||| ||  ||||||||||||||||||||||||||| || || |   | ||||||||  | ||  |||| | ||||||||| |||||||||||  ||||||||||||
tggggattaggcttttgacgttctcaatcaagttacgtttgtgtataggttagagtccaaagttgttagatttaatattttctggtgattggttgtttagGGTTTCAAGAGGTACGTTGAGATCGGGAGAGTAGCACTTGTGAACTACGGAGAAGATCATGGAAAGCTCGTCGTTATCGTCGACGTTGTTGACCAGAACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5770790|gb|AI973964.1|AI973964
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|208045835|gb|GD845129.1|GD845129
EST:     CCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|208041680|gb|GD843074.1|GD843074
EST:     CTTCCACCCCCGTACCGTCCCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|298163335|gb|HO012068.1|HO012068
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|254321857|gb|GR837271.1|GR837271
EST:     CCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|192328761|gb|FK022547.1|FK022547
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|193551720|gb|FK506881.1|FK506881
EST:     CTT-CACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|7042248|gb|AW472142.1|AW472142
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|4291136|gb|AI441718.1|AI441718
EST:     GTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: GTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|15815103|gb|BI787378.1|BI787378
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|12690000|gb|BG156336.1|BG156336
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|16348253|gb|BI973848.1|BI973848
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|193512002|gb|FK471454.1|FK471454
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|193633408|gb|FK584632.1|FK584632
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|14991095|gb|BI316768.1|BI316768
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|7234584|gb|AW569920.1|AW569920
EST:     GCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: GCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|18039321|gb|BM307615.1|BM307615
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|24136942|gb|BU927452.1|BU927452
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|7234508|gb|AW569845.1|AW569845
EST:     GCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: GCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|7693023|gb|AW761122.1|AW761122
EST:     CCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|5126838|gb|AI748574.1|AI748574
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|15000999|gb|BI321813.1|BI321813
EST:     CTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|213593362|gb|DB969936.1|DB969936
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|151397578|gb|EV267451.1|EV267451
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|21993694|gb|BQ785222.1|BQ785222
EST:     TTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: TTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|192303868|gb|FG998220.1|FG998220
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|298174801|gb|HO017910.1|HO017910
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|7925814|gb|AW831840.1|AW831840
EST:     CACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|4306863|gb|AI443965.1|AI443965
EST:     TTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: TTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|298193712|gb|HO040360.1|HO040360
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|193638414|gb|FK586754.1|FK586754
EST:     TTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: -TTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|13787362|gb|BG649954.1|BG649954
EST:     CCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|24136770|gb|BU927280.1|BU927280
EST:     CCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|298178616|gb|HO024351.1|HO024351
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCAAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|21601022|gb|BQ611353.1|BQ611353
EST:     AGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: AGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|17022676|gb|BM093710.1|BM093710
EST:     CTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|16519551|gb|BI347336.1|BI347336
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|7146345|gb|AW508267.1|AW508267
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|57575581|gb|CX548556.1|CX548556
EST:     GCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: GCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|7640454|gb|AW734756.1|AW734756
EST:     TCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: TCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|213589002|gb|DB973102.1|DB973102
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|298189077|gb|HO037480.1|HO037480
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|8827789|gb|BE211519.1|BE211519
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|213592943|gb|DB969853.1|DB969853
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|7685277|gb|AW755925.1|AW755925
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|26268881|gb|CA819944.1|CA819944
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|120531931|gb|EH260064.1|EH260064
EST:     CAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|9564031|gb|BE473540.1|BE473540
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|192304201|gb|FG993513.1|FG993513
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|31457840|gb|CD399868.1|CD399868
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|193671891|gb|FK614593.1|FK614593
EST:     TTCCACCCCCGTACCCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: TTCCACCCCCGTA-CCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|151401993|gb|EV271806.1|EV271806
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTCGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|5677541|gb|AI938671.1|AI938671
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|5058153|gb|AI736629.1|AI736629
EST:     CCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|151397093|gb|EV266966.1|EV266966
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|151402189|gb|EV272002.1|EV272002
EST:     TTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: TTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|209705890|gb|BW675995.1|BW675995
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|19452511|gb|BM953921.1|BM953921
EST:     CAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|18039520|gb|BM307814.1|BM307814
EST:     CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: CTTCCACCCCCGTACCGTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|254318352|gb|GR832520.1|GR832520
EST:     GTCTCTGCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: GTCTCTGCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
EST: gi|31463320|gb|CD405348.1|CD405348
EST:     GCCTCTCTGCAATCCACAGCCGAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC
genomic: GCCTCTCTGCAATCCACAGCCGAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttctctttcaaattctcgtattcttaatgtgttttctctgtttcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGCAAGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACA
                        tcttaat  putative branch site (score: 3)
                                tgttttctctgtttct  CT-rich tract
                     tattcttaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgattcctcttcctctcttcactctacaccacttgttctctttcaaattctcgtattcttaatgtgttttctctgtttcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGCAAGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA