1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...agagattctggcatatgtgtgtgtttattttatttttgttaccctgttatttgattggaaatagtgttgaatgttgtctaattggaatctttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTAGTTGAGGCTTATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCT
species | Glycine max |
transcript | GLYMA10G00610.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTAEST: gi|7925896|gb|AW831922.1|AW831922
genomic: ATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgtgaaatccc ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: CTTCCACCCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTAEST: gi|213594465|gb|DB970031.1|DB970031
genomic: CTTCCACCCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgtgaaatccc ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: CTTCCACCCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTAEST: gi|9987546|gb|BE661654.1|BE661654
genomic: CTTCCACCCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgtgaaatccc ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: CTTCCACCCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTAEST: gi|11274935|gb|BF325260.1|BF325260
genomic: CTTCCACCCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgtgaaatccc ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: CTTCCACCCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTAEST: gi|192294686|gb|FG986535.1|FG986535
genomic: CTTCCACCCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgtgaaatccc ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: CTTCCACCCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
genomic: CTTCCACCCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgtgaaatccc ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
gttatttgattggaaatagtgttgaatgttgtctaattggaatctttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTAGTTGAGGCTTATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCT
gtctaat putative branch site (score: 3)
tctttgt putative PPT
aaatagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agagattctggcatatgtgtgtgtttattttatttttgttaccctgttatttgattggaaatagtgttgaatgttgtctaattggaatctttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTAGTTGAGGCTTATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCT
- -gattctg
- - - - - - - - gtgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtc