1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aagtttgatttaggatttagattagggtttttggttaatttgtatggattttaatgcagttagttttaatttggattgattttgaattcgggcaatgcagCTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGGTTAACACTTCTGCCTACTTTTTTAAGAAAACCGCTGATCTCATTGATTT
species | Glycine max |
transcript | GLYMA09G37020.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCG CTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATEST: gi|6483116|gb|AW202308.1|AW202308
genomic: TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCGgtacgtgaaa ... ggcaatgcagCTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAAT
EST: TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCG CTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGGEST: gi|17964323|gb|BM271060.1|BM271060
genomic: TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCGgtacgtgaaa ... ggcaatgcagCTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGG
EST: TTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCG CTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGGEST: gi|20448729|gb|BQ252853.1|BQ252853
genomic: TTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCGgtacgtgaaa ... ggcaatgcagCTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGG
EST: TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCG CTGAAAGACTGGGTAGGGGTATTEST: gi|120532139|gb|EH260272.1|EH260272
genomic: TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCGgtacgtgaaa ... ggcaatgcagCTGAAAGACTGGGTAGGGGTATT
EST: TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCG CTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGGEST: gi|37997541|gb|CF809130.1|CF809130
genomic: TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCGgtacgtgaaa ... ggcaatgcagCTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGG
EST: TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCG CTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGGEST: gi|9564128|gb|BE473637.1|BE473637
genomic: TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCGgtacgtgaaa ... ggcaatgcagCTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGG
EST: TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCG CTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGGEST: gi|7684793|gb|AW755441.1|AW755441
genomic: TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCGgtacgtgaaa ... ggcaatgcagCTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGG
EST: TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCG CTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGGEST: gi|19348174|gb|BM892706.1|BM892706
genomic: TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCGgtacgtgaaa ... ggcaatgcagCTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGG
EST: TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCG CTGAAAGACTGGG
genomic: TTCTTATTCTTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCGgtacgtgaaa ... ggcaatgcagCTGAAAGACTGGG
ggattttaatgcagttagttttaatttggattgattttgaattcgggcaatgcagCTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGGTTAACACTTCTGCCTACTTTTTTAAGAAAACCGCTGATCTCATTGATTT
agttagttttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtttgatttaggatttagattagggtttttggttaatttgtatggattttaatgcagttagttttaatttggattgattttgaattcgggcaatgcagCTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGGTTAACACTTCTGCCTACTTTTTTAAGAAAACCGCTGATCTCATTGATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT