1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ggaaaacgctttaatctgcttcgttttgttcggagaaaaaaaaaactgtgttgtagcggtgcttgagtttgaaactaacttgctttgctagtgaatttagCTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCACGCTCCAGTTCTAGTTCTCA
species | Glycine max |
transcript | GLYMA09G28650.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGACCAACTTCAG CTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATACACEST: gi|209711120|gb|BW676339.1|BW676339
genomic: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAGgtaactcaca ... gtgaatttagCTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCAC
EST: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAG CTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCACEST: gi|193334002|gb|FK299164.1|FK299164
genomic: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAGgtaactcaca ... gtgaatttagCTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCAC
EST: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAG CTCTTGCGTGCGAAAATTCTCGGAATATTTTGAAATCCAGGAAATCATGCAEST: gi|208072543|gb|GD869817.1|GD869817
genomic: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAGgtaactcaca ... gtgaatttagCTCTTGCGTGCGAAAATTCTCGGAATATTTTGAA-TCCAGGAAATCATGCA
EST: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAG CTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCACEST: gi|209700495|gb|BW660895.1|BW660895
genomic: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAGgtaactcaca ... gtgaatttagCTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCAC
EST: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAGTGAATTTAGEST: gi|209722479|gb|BW682829.1|BW682829
genomic: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTC---------AGgtaactcaca ... gt
EST: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAG CTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCACEST: gi|213618229|gb|DB972999.1|DB972999
genomic: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAGgtaactcaca ... gtgaatttagCTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCAC
EST: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAG CTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCACEST: gi|209725416|gb|BW658278.1|BW658278
genomic: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAGgtaactcaca ... gtgaatttagCTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCAC
EST: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAGTGAATTTAGEST: gi|193400183|gb|FK365738.1|FK365738
genomic: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTC---------AGgtaactcaca ... gt
EST: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAG CTCCTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCACEST: gi|193682216|gb|FK622950.1|FK622950
genomic: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAGgtaactcaca ... gtgaatttagCTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCAC
EST: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAG CTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCACEST: gi|192296930|gb|FG991941.1|FG991941
genomic: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAGgtaactcaca ... gtgaatttagCTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCAC
EST: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAG CTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCACEST: gi|193713385|gb|FK654020.1|FK654020
genomic: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAGgtaactcaca ... gtgaatttagCTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCAC
EST: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAG CTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCAC
genomic: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAGgtaactcaca ... gtgaatttagCTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCAC
ctgtgttgtagcggtgcttgagtttgaaactaacttgctttgctagtgaatttagCTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCACGCTCCAGTTCTAGTTCTCA
aactaac putative branch site (score: 1)
tgaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaaaacgctttaatctgcttcgttttgttcggagaaaaaaaaaactgtgttgtagcggtgcttgagtttgaaactaacttgctttgctagtgaatttagCTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCACGCTCCAGTTCTAGTTCTCA
ggaaaac
- - - - - - - -ctgcttc
- - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - -ctgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaactaa