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gttcaccttctcataattaatttttttcttcaatttttgttatttatttctttattttgtgaggctttcttgtcttttttgttttcatgtgtatgtgattattggttattggtgatttgaaaattagAGTATAGCTCAAGTGACCGAAGCAACTTTGCAAGATTTTGAGGAGGGGTTGCGAGCTTGCAGTGAAGCAGCTAAGACATGGATGACT
species | Glycine max |
transcript | GLYMA09G08150.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG AGTATAGCTCAAGTGACCGAAGCAACTTTGCAAGATTTTGAGGAGGGGTTGEST: gi|151397251|gb|EV267124.1|EV267124
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... tgaaaattagAGTATAGCTCAAGTGACCGAAGCAACTTTGCAAGATTTTGAGGAGGGGTTG
EST: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG AGTATAGCTCAAGTGACCGAAGCAACTTTGCAAGATTTTGAGGAGGGGTTGEST: gi|151408630|gb|EV278438.1|EV278438
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... tgaaaattagAGTATAGCTCAAGTGACCGAAGCAACTTTGCAAGATTTTGAGGAGGGGTTG
EST: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG AGTATAGCTCAAGTGACCGAAGCAACTTTGCAAGATTTTGAGGAGGGGTTGEST: gi|16347961|gb|BI973556.1|BI973556
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... tgaaaattagAGTATAGCTCAAGTGACCGAAGCAACTTTGCAAGATTTTGAGGAGGGGTTG
EST: TTCTGTCACGTTCTCGTTAATCCATATCTAACAATCAT AGTATAGCTCAAGTGACCGAAGCAACTTTGCAAGATTTTGAGGAGGGGTTGEST: gi|254331835|gb|GR846145.1|GR846145
genomic: TTCTGTCAC-TTCT-GTTAATCC-T-TCTAACAATCAGgttcaccttc ... tgaaaattagAGTATAGCTCAAGTGACCGAAGCAACTTTGCAAGATTTTGAGGAGGGGTTG
EST: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG AGTATAGCTCAAGTGACCGAAGCAACTTTGCAAGATTTTGAGGAGGGGTTG
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... tgaaaattagAGTATAGCTCAAGTGACCGAAGCAACTTTGCAAGATTTTGAGGAGGGGTTG
tcttttttgttttcatgtgtatgtgattattggttattggtgatttgaaaattagAGTATAGCTCAAGTGACCGAAGCAACTTTGCAAGATTTTGAGGAGGGGTTGCGAGCTTGCAGTGAAGCAGCTAAGACATGGATGACT
tgatttgaaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcaccttctcataattaatttttttcttcaatttttgttatttatttctttattttgtgaggctttcttgtcttttttgttttcatgtgtatgtgattattggttattggtgatttgaaaattagAGTATAGCTCAAGTGACCGAAGCAACTTTGCAAGATTTTGAGGAGGGGTTGCGAGCTTGCAGTGAAGCAGCTAAGACATGGATGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA