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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatataaaagcatcatattgttacttttattttgacagtgcataatattgattatctgttattcactgtgtttagGATTTGAAACACCCGGGGAATGGGAGGACCACCATAGGATTTTTGGTGTAGATGGTCCCAATATTCAGTTCATG

Basic information

species Glycine max
transcript GLYMA09G03590.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G03590.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv05s0020g00460.t01 (Vitis vinifera), 3'ss of exon 3
gtaaatataaaagcatcatat-tgttacttttattttgacagtgcataa----tattgattatctgtt--attcactgtg-----tttagGATTTGAAACACCCGGGGAATGGGAGGACCACCATAGGATTTTTGGTGTAGATGGTCCCAATATTCAGTTCATG
|||||  |   ||   ||| | |||     | ||  |||   |     |     |||| |      ||  ||| | ||||     || |||||||||| ||||||| |||||||| ||||||||||||||||||||| | ||||||||  |||| |||| |  |
gtaaac-tggtagttccatttctgtgtagataatgctgagctttttcgagtcccattgttccctcattgtattgattgtggcttgttcagGATTTGAATCACCCGGTGAATGGGATGACCACCATAGGATTTTTGGTCTGGATGGTCCAGATATCCAGTACTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11412481|gb|BF424492.1|BF424492
EST:     TCAGAACGTGTATTACCCTGCTGCCACCAATTATGGGTATTACTGTACAG                         GATTTGAAACACCCGGGGAATGGGAGGACCACCATAGGATTTTTGGTGTAG
genomic: TCAGAACGTGTATTACCCTGCTGCCACCAATTATGGGTATTACTGTACAGgtaaatataa ... ctgtgtttagGATTTGAAACACCCGGGGAATGGGAGGACCACCATAGGATTTTTGGTGTAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacttttattttgacagtgcataatattgattatctgttattcactgtgtttagGATTTGAAACACCCGGGGAATGGGAGGACCACCATAGGATTTTTGGTGTAGATGGTCCCAATATTCAGTTCATG
                         tattgat  putative branch site (score: 3)
                     ataatattgattatct  TA-rich tract