1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cttcgttggctgtaaatgtcctggtttcacgggttgtccatacaatacaattttgttacttactgacactttacttcatggcaccctatgctttctgtagGTTTGTAAAAGATGGCAGATGCCGAGGATATTCAACCCCTTGTTTGCGACAATGGAACTGGAATGGTCAAG
species | Glycine max |
transcript | GLYMA08G15480.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTTGGCTTTGCTTATCGATTCTCTCTCCTCTCGTTTCTCTAATTCCAAG GTTTGTAAAAGATGGCAGATGCCGAGGATATTCAACCCCTTGTTTGCGACAEST: gi|16347205|gb|BI972800.1|BI972800
genomic: GCTTGGCTTTGCTTATCGATTCTCTCTCCTCTCGTTTCTCTAATTCCAAGgtatttctct ... ctttctgtagGTTTGTAAAAGATGGCAGATGCCGAGGATATTCAACCCCTTGTTTGCGACA
EST: GCTTGGCTTTGCTTATCGATTCTCTCTCCTCTCGTTTCTCTAATTCCAAG GTTTGTAAAAGATGGCAGATGCCGAGGATATTCAACCCCTTGTTTGCGACAEST: gi|8283584|gb|BE021143.1|BE021143
genomic: GCTTGGCTTTGCTTATCGATTCTCTCTCCTCTCGTTTCTCTAATTCCAAGgtatttctct ... ctttctgtagGTTTGTAAAAGATGGCAGATGCCGAGGATATTCAACCCCTTGTTTGCGACA
EST: GCTTGGCTTTGCTTATCGATTCTCTCTCCTCTCGTTTCTCTAATTCCAAG GTTTGTAAAAGATGGCAGATGCCGAGGATATTCAACCCCTTGTTTGCGACAEST: gi|4303219|gb|AI443445.1|AI443445
genomic: GCTTGGCTTTGCTTATCGATTCTCTCTCCTCTCGTTTCTCTAATTCCAAGgtatttctct ... ctttctgtagGTTTGTAAAAGATGGCAGATGCCGAGGATATTCAACCCCTTGTTTGCGACA
EST: GCTTGGCTTTGCTTATCGATTCTCTCTCCTCTCGTTTCTCTAATTCCAAG GTTTGTAAAAGATGGCAGATGCCGAGGATATTCAACCCCTTGTTTGCGACAEST: gi|209707860|gb|BW656991.1|BW656991
genomic: GCTTGGCTTTGCTTATCGATTCTCTCTCCTCTCGTTTCTCTAATTCCAAGgtatttctct ... ctttctgtagGTTTGTAAAAGATGGCAGATGCCGAGGATATTCAACCCCTTGTTTGCGACA
EST: GCTTGGCTTTGCTTATCGATTCTCTCTCCTCTCGTTTCTCTAATTCCAAG GTTTGTAAAAGATGGCAGATGCCGAGGATATTCAACCCCTTGTTTGCGACAEST: gi|209724985|gb|BW662986.1|BW662986
genomic: GCTTGGCTTTGCTTATCGATTCTCTCTCCTCTCGTTTCTCTAATTCCAAGgtatttctct ... ctttctgtagGTTTGTAAAAGATGGCAGATGCCGAGGATATTCAACCCCTTGTTTGCGACA
EST: GCTTGGCTTTGCTTATCGATTCTCTCTCCTCTCGTTTCTCTAATTCCAAG GTTTGTAAAAGATGGCAGATGCCGAGGATATTCAACCCCTTGTTTGCGACA
genomic: GCTTGGCTTTGCTTATCGATTCTCTCTCCTCTCGTTTCTCTAATTCCAAGgtatttctct ... ctttctgtagGTTTGTAAAAGATGGCAGATGCCGAGGATATTCAACCCCTTGTTTGCGACA
tacaattttgttacttactgacactttacttcatggcaccctatgctttctgtagGTTTGTAAAAGATGGCAGATGCCGAGGATATTCAACCCCTTGTTTGCGACAATGGAACTGGAATGGTCAAG
tactgac putative branch site (score: 1)
tgctttct putative PPT
ttttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcgttggctgtaaatgtcctggtttcacgggttgtccatacaatacaattttgttacttactgacactttacttcatggcaccctatgctttctgtagGTTTGTAAAAGATGGCAGATGCCGAGGATATTCAACCCCTTGTTTGCGACAATGGAACTGGAATGGTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - tggctgt
- - - - - - - - tgtcctg
- - - - - - - - - - - - - - - gggttgt
- - - - - - - - - - - - - - - - - - -ccataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tactgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaccct