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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgctacgctcttatcaatcccctcaatcatcgtatcttctttacactaaactctgtttgtacaattatataaacacaccgtttttgcgtttcagGCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCCGCAATGTGCCTCCAG

Basic information

species Glycine max
transcript GLYMA08G11740.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G11740.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G112015_T01 (Zea mays), 3'ss of exon 1
gtacgctacgctcttatcaatcccctcaa-tcatcgtatcttc--tttacactaaactc-tgtttgtacaattatataaacacaccgtttttgcgtttcagGCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCCGCAATGTGCCTCCAG
|   ||||     | |  |     |  ||   ||| |   |||    |   ||| || | |     |   |  |  | |||   |   | ||   |  ||||| |||||| ||||||| ||| | |||||||| |||||||| || ||||| || ||||||||||||
gcctgctataacttcagtatctggcaaaaactatcttcgtttcggcgtgtgctagacacatcgacatctcaaaacgttaacgagcgactctttt-tcgcagGCCAATACGCTGCGGTTGTACCTCACCTGCATCCGGAACACTCTGGAGGCGGCGATGTGCCTCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298170368|gb|HO018992.1|HO018992
EST:     CCAAACGAAACGAAACGCAGCGTTTCTTCAGATTCAGACCCAAACTCATG                         GCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCC
genomic: CCAAACGAAACGAAACGCAGCGTTTCTTCAGATTCAGACCCAAACTCATGgtacgctacg ... tgcgtttcagGCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCC
EST: gi|192307232|gb|FK001232.1|FK001232
EST:     CCAAACGAAACGAAACGCAGCGTTTCTTCAGATTCAGACCCAAACTCATG                         GCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCC
genomic: CCAAACGAAACGAAACGCAGCGTTTCTTCAGATTCAGACCCAAACTCATGgtacgctacg ... tgcgtttcagGCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCC
EST: gi|192325005|gb|FK016146.1|FK016146
EST:     CCAAACGAAACGAAACGCAGCGTTTCTTCAGATTCAGACCCAAACTCATG                         GCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCC
genomic: CCAAACGAAACGAAACGCAGCGTTTCTTCAGATTCAGACCCAAACTCATGgtacgctacg ... tgcgtttcagGCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCC
EST: gi|298187154|gb|HO034303.1|HO034303
EST:     CCAAACGAAACGAAACGCAGCGTTTCTTCAGATTCAGACCCAAACTCATG                         GCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCC
genomic: CCAAACGAAACGAAACGCAGCGTTTCTTCAGATTCAGACCCAAACTCATGgtacgctacg ... tgcgtttcagGCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCC
EST: gi|15287594|gb|BI471485.1|BI471485
EST:     CCAAACGAAACGAAACGCAGCGTTTCTTCAGATTCAGACCCAAACTCATG                         GCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCC
genomic: CCAAACGAAACGAAACGCAGCGTTTCTTCAGATTCAGACCCAAACTCATGgtacgctacg ... tgcgtttcagGCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCC
EST: gi|298177566|gb|HO027233.1|HO027233
EST:     CCAAACGAAACGAAACGCAGCGTTTCTTCAGATTCAGACCCAAACTCATG                         GCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGATGCC
genomic: CCAAACGAAACGAAACGCAGCGTTTCTTCAGATTCAGACCCAAACTCATGgtacgctacg ... tgcgtttcagGCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttacactaaactctgtttgtacaattatataaacacaccgtttttgcgtttcagGCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCCGCAATGTGCCTCCAG
    cactaaa  putative branch site (score: 2)
                                      ccgttttt  putative PPT
                tttgtacaattatata  TA-rich tract