1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atgtagttttaatcaatttattatcttggatcattttgtaagtactaagcacttctgacatctaattatacaaatatatattttttctcaaaacgtgcagCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGAGGCTAATGTGTCTACACGGGAAGCCTTG
species | Glycine max |
transcript | GLYMA08G11120.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAG CATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGAEST: gi|208102506|gb|GD900229.1|GD900229
genomic: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAGgtatatatat ... aaacgtgcagCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGA
EST: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAG CATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGAEST: gi|207784105|gb|GD758415.1|GD758415
genomic: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAGgtatatatat ... aaacgtgcagCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGA
EST: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAG CATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGAEST: gi|193388892|gb|FK353567.1|FK353567
genomic: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAGgtatatatat ... aaacgtgcagCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGA
EST: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAG CATGCTCAAAACGCTAGAGAGGTTACCTAGAAATGTAACTATGGTGCGCCTEST: gi|207727051|gb|GD704277.1|GD704277
genomic: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAGgtatatatat ... aaacgtgcagCATGCTCAAAACGCTAGAGAGG-TACC-AGAAATGTAACTATGGTGCGCCT
EST: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAG CATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGAEST: gi|208157311|gb|GD955913.1|GD955913
genomic: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAGgtatatatat ... aaacgtgcagCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGA
EST: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAG CATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAAEST: gi|193345817|gb|FK311338.1|FK311338
genomic: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAGgtatatatat ... aaacgtgcagCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAA
EST: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAG CATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGAEST: gi|193431784|gb|FK395584.1|FK395584
genomic: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAGgtatatatat ... aaacgtgcagCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGA
EST: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAG CATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGAEST: gi|208046011|gb|GD848189.1|GD848189
genomic: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAGgtatatatat ... aaacgtgcagCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGA
EST: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAG CATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGAEST: gi|193413126|gb|FK380861.1|FK380861
genomic: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAGgtatatatat ... aaacgtgcagCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGA
EST: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAG CATTGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGEST: gi|208310841|gb|GE108105.1|GE108105
genomic: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAGgtatatatat ... aaacgtgcagCAT-GCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTG
EST: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAG CATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGAEST: gi|193451978|gb|FK420988.1|FK420988
genomic: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAGgtatatatat ... aaacgtgcagCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGA
EST: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAG CATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGAEST: gi|193501099|gb|FK464616.1|FK464616
genomic: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAGgtatatatat ... aaacgtgcagCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGA
EST: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAG CATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGAEST: gi|193356941|gb|FK319605.1|FK319605
genomic: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAGgtatatatat ... aaacgtgcagCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGA
EST: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAG CATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGAEST: gi|193464580|gb|FK434146.1|FK434146
genomic: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAGgtatatatat ... aaacgtgcagCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGA
EST: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAG CATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGAEST: gi|207756275|gb|GD727482.1|GD727482
genomic: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAGgtatatatat ... aaacgtgcagCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGA
EST: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAG CATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAGgtatatatat ... aaacgtgcagCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGA
taagcacttctgacatctaattatacaaatatatattttttctcaaaacgtgcagCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGAGGCTAATGTGTCTACACGGGAAGCCTTG
acatctaattatacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtagttttaatcaatttattatcttggatcattttgtaagtactaagcacttctgacatctaattatacaaatatatattttttctcaaaacgtgcagCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGAGGCTAATGTGTCTACACGGGAAGCCTTG
- - - - - - - - - - - - - - - - - - - - - - ctaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - ttctgac