1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaattccaactatttcatttcaaaacccacgaaactgttacattccgttattaattttgctattactgttaattttatcgtttttctgttacaacagAGATTTCCAAAGGCGAAGGGAGGGTTGGCCAAACAACAAACGTAATTATTGGAAGCACTGCTGCCGATGATTCTAACAATGAATGGTTGGCTTTGGACCA
species | Glycine max |
transcript | GLYMA08G10990.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCAGAACGAAACGCCGTTGTCTCAAGACCCTGTCTTGAAGGCCATTTCAG AGATTTCCAAAGGCGAAGGGAGGGTTGGCCAAACAACAAACGTAATTATTGEST: gi|13125424|gb|BG315994.1|BG315994
genomic: TCAGAACGAAACGCCGTTGTCTCAGGACCCTGTCTTGAAGGCCATTTCAGgtaattccaa ... gttacaacagAGATTTCCAAAGGCGAAGGGAGGGTTGGCCAAACAACAAACGTAATTATTG
EST: TCAGAACGAAACGCCGNTGTCTCAGGACCCTGTCTTGAAAGCCATTTCAG AGATTTCCAAAGGCCAAGGGEST: gi|5605980|gb|AI900078.1|AI900078
genomic: TCAGAACGAAACGCCGTTGTCTCAGGACCCTGTCTTGAAGGCCATTTCAGgtaattccaa ... gttacaacagAGATTTCCAAAGGCGAAGGG
EST: TCAGAACGAAACGCCGTTGTCTCAGGACCCTGTCTTGAAGGCCATTTCAG AGATTTCCAAAGGGCGAAGGGAGGGTTGGCCAAACAACAAACGTAATTATTEST: gi|7796482|gb|AW781879.1|AW781879
genomic: TCAGAACGAAACGCCGTTGTCTCAGGACCCTGTCTTGAAGGCCATTTCAGgtaattccaa ... gttacaacagAGATTTCCAAA-GGCGAAGGGAGGGTTGGCCAAACAACAAACGTAATTATT
EST: TCAGAACGAAACGCCGTTGTCTCAGGACCCTGTCTTGAAGGCCATTTCAG AGATTTCCAAAGGCGAAGGGAGGGTTGGCCAAACAACAAACGTAATTATTGEST: gi|20811540|gb|BQ296018.1|BQ296018
genomic: TCAGAACGAAACGCCGTTGTCTCAGGACCCTGTCTTGAAGGCCATTTCAGgtaattccaa ... gttacaacagAGATTTCCAAAGGCGAAGGGAGGGTTGGCCAAACAACAAACGTAATTATTG
EST: TCAGAACGAAACGCCGTTGTCTCAGGACCCTGTCTTGAAGGCCATTTCAG AGATTTCCAAAGGCGAAGGGAGGGTTGGCCAAACAACAAACGTAATTATTGEST: gi|298197438|gb|HO044917.1|HO044917
genomic: TCAGAACGAAACGCCGTTGTCTCAGGACCCTGTCTTGAAGGCCATTTCAGgtaattccaa ... gttacaacagAGATTTCCAAAGGCGAAGGGAGGGTTGGCCAAACAACAAACGTAATTATTG
EST: TCAGAACGAAACGCCGTTGTCTCAGGACCCTGTCTTGAAGGCCATTTCAG AGATTTCCAAAGGCGAAGGGAGGGTTGGCCAAACAACAAACGTAATTATTGEST: gi|22541149|gb|BU090992.1|BU090992
genomic: TCAGAACGAAACGCCGTTGTCTCAGGACCCTGTCTTGAAGGCCATTTCAGgtaattccaa ... gttacaacagAGATTTCCAAAGGCGAAGGGAGGGTTGGCCAAACAACAAACGTAATTATTG
EST: TCAGAACGAAACGCCGTTGTCTCAGGACCCTGTCTTGAAGGCCATTTCAG AGATTTCCAAAGGCGAAGGGAGGGTTGGCCAAACAACAAACGTAATTATTGEST: gi|21888824|gb|BQ742037.1|BQ742037
genomic: TCAGAACGAAACGCCGTTGTCTCAGGACCCTGTCTTGAAGGCCATTTCAGgtaattccaa ... gttacaacagAGATTTCCAAAGGCGAAGGGAGGGTTGGCCAAACAACAAACGTAATTATTG
EST: TCAGAACGAAACGCCGTTGTCTCAGGACCCTGTCTTGAAGGCCATTTCAG AGATTTCCAAAGGCGAAGGGAGGGTTGGCCAAACAACAAACGTAATTATTGEST: gi|6481967|gb|AW201238.1|AW201238
genomic: TCAGAACGAAACGCCGTTGTCTCAGGACCCTGTCTTGAAGGCCATTTCAGgtaattccaa ... gttacaacagAGATTTCCAAAGGCGAAGGGAGGGTTGGCCAAACAACAAACGTAATTATTG
EST: TCAGAACGAAACGCCGTTGTCTCAGGACCCTGTCTTGAAGGCCATTTCAG AGATTTCCAAAGGCGAAGGGAGGGTTGGCCAAACAACAAACGTAATTAT-G
genomic: TCAGAACGAAACGCCGTTGTCTCAGGACCCTGTCTTGAAGGCCATTTCAGgtaattccaa ... gttacaacagAGATTTCCAAAGGCGAAGGGAGGGTTGGCCAAACAACAAACGTAATTATTG
ttccgttattaattttgctattactgttaattttatcgtttttctgttacaacagAGATTTCCAAAGGCGAAGGGAGGGTTGGCCAAACAACAAACGTAATTATTGGAAGCACTGCTGCCGATGATTCTAACAATGAATGGTTGGCTTTGGACCA
tttttctgtt CT-rich tract
ttattaattttgctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattccaactatttcatttcaaaacccacgaaactgttacattccgttattaattttgctattactgttaattttatcgtttttctgttacaacagAGATTTCCAAAGGCGAAGGGAGGGTTGGCCAAACAACAAACGTAATTATTGGAAGCACTGCTGCCGATGATTCTAACAATGAATGGTTGGCTTTGGACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC