1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttattttattttatattttgagaaatctactgattattaaatgacctggctatgattttctttgaatgcttatgagcttgatttcttttgtctgtgtagCCGTGGGAGAGTTATCGTTCAAACGTGTCCATAGATCTTACTAAGCATCATGTGCCAAAGAATGTTCTGGATAAAGTTGCTTACAGGACAGTGAAGCTCC
species | Glycine max |
transcript | GLYMA08G07700.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGAAGGTTGTGAGAGAGGACGGAACGGAGTGGCCTTGGAACTGCTTCATG CCGTGGGAGAGTTATCGTTCAAACGTGTCCATAGATCTTACTAAGCATCATEST: gi|209729237|gb|BW663589.1|BW663589
genomic: CGAAGGTTGTGAGAGAGGACGGAACGGAGTGGCCTTGGAACTGCTTCATGgtgaggattc ... gtctgtgtagCCGTGGGAGAGTTATCGTTCAAACGTGTCCATAGATCTTACTAAGCATCAT
EST: CGAAGGTTGTGAGAGAGGACGGAACGGAGTGGCCTTGGAACTGCTTCATG CCGTGGGAGAGTTATCGTTCAAACGTGTCCATAGATCTTACTAAGCATCATEST: gi|209704246|gb|BW683474.1|BW683474
genomic: CGAAGGTTGTGAGAGAGGACGGAACGGAGTGGCCTTGGAACTGCTTCATGgtgaggattc ... gtctgtgtagCCGTGGGAGAGTTATCGTTCAAACGTGTCCATAGATCTTACTAAGCATCAT
EST: CGAAGGTTGTGAGAGAGGACGGAACGGAGTGGCCTTGGAACTGCTTCATG CCGTGGGAGAGTTATCGTTCAAACGTGTCCATAGATCTTACTAAGCATCATEST: gi|213604712|gb|DB956081.1|DB956081
genomic: CGAAGGTTGTGAGAGAGGACGGAACGGAGTGGCCTTGGAACTGCTTCATGgtgaggattc ... gtctgtgtagCCGTGGGAGAGTTATCGTTCAAACGTGTCCATAGATCTTACTAAGCATCAT
EST: CGAAGGTTGTGAGAGAGGACGGAACGGAGTGGCCTTGGAACTGCTTCATG CCGTGGGAGAGTTATCGTTCAAACGTGTCCATAGATCTTACTAAGCATCAT
genomic: CGAAGGTTGTGAGAGAGGACGGAACGGAGTGGCCTTGGAACTGCTTCATGgtgaggattc ... gtctgtgtagCCGTGGGAGAGTTATCGTTCAAACGTGTCCATAGATCTTACTAAGCATCAT
cctggctatgattttctttgaatgcttatgagcttgatttcttttgtctgtgtagCCGTGGGAGAGTTATCGTTCAAACGTGTCCATAGATCTTACTAAGCATCATGTGCCAAAGAATGTTCTGGATAAAGTTGCTTACAGGACAGTGAAGCTCC
gcttgat putative branch site (score: 5)
tttcttttgtctgt CT-rich tract
tatgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttattttattttatattttgagaaatctactgattattaaatgacctggctatgattttctttgaatgcttatgagcttgatttcttttgtctgtgtagCCGTGGGAGAGTTATCGTTCAAACGTGTCCATAGATCTTACTAAGCATCATGTGCCAAAGAATGTTCTGGATAAAGTTGCTTACAGGACAGTGAAGCTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - tctactg
- - - - - - - - - - - - - - - - - - - - - tgacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagcttg