1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttctcttcatttcaccattttctcctctttcgtctcccattcatgctctaaaactgattcgtacttttccttctgcagGAATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACCAGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGA
species | Glycine max |
transcript | GLYMA08G02420.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCAGGAAGCTGAGGAAAAAGCCAATGAGATCTCTGTCTCCGCCGAAGAG GAATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAATAAGACCEST: gi|207720108|gb|GD702607.1|GD702607
genomic: GCCAGGAAGCTGAGGAAAAAGCCAATGAGATCTCTGTCTCCGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACC
EST: GGAAGCTGAGGAAAAAGCCAATGAGATCTCTGTCTCCGCCGAGGAG GAATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACCEST: gi|208327231|gb|GE122397.1|GE122397
genomic: GGAAGCTGAGGAAAAAGCCAATGAGATCTCTGTCTCCGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACC
EST: GCCAGGAAGCTGAGGAAAAAGCCAATGAGATCTCTGTCTCCGCCGAAGAG GAATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACCEST: gi|13252165|gb|BG363068.1|BG363068
genomic: GCCAGGAAGCTGAGGAAAAAGCCAATGAGATCTCTGTCTCCGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACC
EST: GCCAGGAAGCTGAGGAAAAAGCCAATGAGATCTCTGTCTCCGCCGAAGAG GAATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACCEST: gi|208182348|gb|GD980683.1|GD980683
genomic: GCCAGGAAGCTGAGGAAAAAGCCAATGAGATCTCTGTCTCCGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACC
EST: GCCAATGAGAATCTCTGTCTCCGCCGAAGAG GAATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACCEST: gi|6455236|gb|AW185919.1|AW185919
genomic: GCCAATGAG-ATCTCTGTCTCCGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACC
EST: GCCAGGAAGCTGAGGAAAAAGCCAATGAGATCTCTGTCTCCGCCGAAGAG GAATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACCEST: gi|208225425|gb|GE025424.1|GE025424
genomic: GCCAGGAAGCTGAGGAAAAAGCCAATGAGATCTCTGTCTCCGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACC
EST: GGAAGCTGGAAGGAAAAAGCCAATGAGATCTCTGTCTCCGCCGAAGAG GAATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACCEST: gi|7639786|gb|AW734101.1|AW734101
genomic: GGAAGCT-G-AGGAAAAAGCCAATGAGATCTCTGTCTCCGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACC
EST: GCCAGGAAGCTGAGGAAAAAGCCAATGAGATCTCTGTCTCCGCCGAAGAG GAATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACCEST: gi|193378853|gb|FK345194.1|FK345194
genomic: GCCAGGAAGCTGAGGAAAAAGCCAATGAGATCTCTGTCTCCGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACC
EST: GGAAGCTGAGGAAAAAGCCAATGAGATCTCTGTCTCCGCCGAAGAG GAATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACCEST: gi|5605982|gb|AI900080.1|AI900080
genomic: GGAAGCTGAGGAAAAAGCCAATGAGATCTCTGTCTCCGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACC
EST: GCCAGGAAGCTGAGGAAAAAGCCAATGAGATCTCTGTCTCCGCCGAAGAG GAATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACC
genomic: GCCAGGAAGCTGAGGAAAAAGCCAATGAGATCTCTGTCTCCGCCGAAGAGgtttctcttc ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACC
cctctttcgtctcccattcatgctctaaaactgattcgtacttttccttctgcagGAATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACCAGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGA
aactgat putative branch site (score: 3)
ttcgtacttttccttc CT-rich tract
tctaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttctcttcatttcaccattttctcctctttcgtctcccattcatgctctaaaactgattcgtacttttccttctgcagGAATTCAATATCGAGAAGCTGCAGTTAGTCGAAGCCGAGAAGAAGAAGACCAGGCAAGAGTACGAACGCAAAGAACGCCAAGTCGAAATTCGCAAGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG