1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attgccttcatcagtcattgtaagtatttcaattaaacagctttgaaggatttaatagaacttagatttgaaatttactcttcttaattggtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATA
species | Glycine max |
transcript | GLYMA07G24950.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAAEST: gi|254347326|gb|GR853575.1|GR853575
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: AAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAAEST: gi|298170625|gb|HO019249.1|HO019249
genomic: AAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAAEST: gi|298164494|gb|HO014139.1|HO014139
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAAEST: gi|21887768|gb|BQ740981.1|BQ740981
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAAEST: gi|298194253|gb|HO040901.1|HO040901
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAAEST: gi|15814266|gb|BI786541.1|BI786541
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAAEST: gi|254347325|gb|GR853574.1|GR853574
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAAEST: gi|208123865|gb|GD922443.1|GD922443
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAAEST: gi|208178423|gb|GD977788.1|GD977788
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAAEST: gi|298199013|gb|HO042376.1|HO042376
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAAEST: gi|208158799|gb|GD954688.1|GD954688
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAAEST: gi|193514832|gb|FK469678.1|FK469678
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAAEST: gi|298172716|gb|HO019756.1|HO019756
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAAEST: gi|298185548|gb|HO030761.1|HO030761
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAAEST: gi|298182508|gb|HO031243.1|HO031243
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAAEST: gi|15661899|gb|BI699270.1|BI699270
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAAEST: gi|298175103|gb|HO014906.1|HO014906
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAAEST: gi|208267617|gb|GE063740.1|GE063740
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: ATCCAGCGTCGTGG TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGG-AEST: gi|192301633|gb|FG994369.1|FG994369
genomic: ATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAAEST: gi|21993992|gb|BQ785520.1|BQ785520
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAAEST: gi|151403964|gb|EV273774.1|EV273774
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAAEST: gi|151409397|gb|EV279205.1|EV279205
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAAEST: gi|298172581|gb|HO019621.1|HO019621
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAATGATCCAGCGTCGTGG TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAAEST: gi|298196851|gb|HO041594.1|HO041594
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
aaggatttaatagaacttagatttgaaatttactcttcttaattggtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATA
tcttaat putative branch site (score: 3)
tccctgc putative PPT
tttaatagaacttaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgccttcatcagtcattgtaagtatttcaattaaacagctttgaaggatttaatagaacttagatttgaaatttactcttcttaattggtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATA
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