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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcaaaacctctcattcctcttcgtttcgattttctcctttttctttatctatttattattcactcggaagtgtttgatgaaatgcgcgtttgataaccgaacggagaatttgttttcagCGGTGCAAGGCGATAGAAGCAGTGAATTTGGAGAATGGAAGGCCGAGCGCGAGCGAGTTCCTAGTCAGCGGAAGCGGAAACGCGATTCCGAGGTACGTCG

Basic information

species Glycine max
transcript GLYMA07G12660.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254348826|gb|GR852505.1|GR852505
EST:     CCACTCCTCGTTTCGCCCCAATCACTCGTATCTCTCTCCGAAACGGCGTC                         CGGTGCAAGGCGATAGAAGCAGTGAATTTGGAGAATGGAAGGCCGAGCGCG
genomic: CCACTCCTCGTTTCGCCCCAATCACTCGTATCTCTCTCCGAAACGGCGTCgtaagtcaaa ... ttgttttcagCGGTGCAAGGCGATAGAAGCAGTGAATTTGGAGAATGGAAGGCCGAGCGCG
EST: gi|298185832|gb|HO030993.1|HO030993
EST:     CCACTCCTCGTTTCGCCCCAATCACTCGTATCTCTCTCCGAAACGGCGTC                         CGGTGCAAGGCGATAGAAGCAGTGAATTTGGAGAATGGAAGGCCGAGCGCG
genomic: CCACTCCTCGTTTCGCCCCAATCACTCGTATCTCTCTCCGAAACGGCGTCgtaagtcaaa ... ttgttttcagCGGTGCAAGGCGATAGAAGCAGTGAATTTGGAGAATGGAAGGCCGAGCGCG
EST: gi|4313916|gb|AI461035.1|AI461035
EST:     CCACTCCTCGTTTCGCCCCAATCACTCGTATCTCTCTCCGAAACGGCGTC                         CGGTGCAAGGCGATAGAAGCAGTGAATTTGGAGAATGGAAGGCCGAGCGCG
genomic: CCACTCCTCGTTTCGCCCCAATCACTCGTATCTCTCTCCGAAACGGCGTCgtaagtcaaa ... ttgttttcagCGGTGCAAGGCGATAGAAGCAGTGAATTTGGAGAATGGAAGGCCGAGCGCG
EST: gi|27446243|gb|CA953366.1|CA953366
EST:     CCACTCCTCGTTTCGCCCCAATCACTCGTATCTCTCTCCGAAACGGCGTC                         CGGTGCAAGGCGATAGAAGCAGTGAATTTGGAGAATGGAAGGCCGAGCGCG
genomic: CCACTCCTCGTTTCGCCCCAATCACTCGTATCTCTCTCCGAAACGGCGTCgtaagtcaaa ... ttgttttcagCGGTGCAAGGCGATAGAAGCAGTGAATTTGGAGAATGGAAGGCCGAGCGCG
EST: gi|16997052|gb|BM086424.1|BM086424
EST:     CCACTCCTCGTTTCGCCCCAATCACTCGTATCTCTCTCCGAAACGGCGTC                         CGGTGCAAGGCGATAGAAGCAGTGAATTTGGAGAATGGAAGGCCGAGCGCG
genomic: CCACTCCTCGTTTCGCCCCAATCACTCGTATCTCTCTCCGAAACGGCGTCgtaagtcaaa ... ttgttttcagCGGTGCAAGGCGATAGAAGCAGTGAATTTGGAGAATGGAAGGCCGAGCGCG
EST: gi|209708416|gb|BW665391.1|BW665391
EST:     CCACTCCTCGTTTCGCCCCAATCACTCGTATCTCTCTCCGAAACGGCGTC                         CGGTGCAAGGCGATAGAAGCAGTGAATTTGGAGAATGGAAGGCCGAGCGCG
genomic: CCACTCCTCGTTTCGCCCCAATCACTCGTATCTCTCTCCGAAACGGCGTCgtaagtcaaa ... ttgttttcagCGGTGCAAGGCGATAGAAGCAGTGAATTTGGAGAATGGAAGGCCGAGCGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggaagtgtttgatgaaatgcgcgtttgataaccgaacggagaatttgttttcagCGGTGCAAGGCGATAGAAGCAGTGAATTTGGAGAATGGAAGGCCGAGCGCGAGCGAGTTCCTAGTCAGCGGAAGCGGAAACGCGATTCCGAGGTACGTCG
                          tgataac  putative branch site (score: 2)
                                            tttgttttc  putative PPT
                                          aatttgtttt  TA-rich tract