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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttttttgtttcttcttctattttacagagattgcttaatgcttattgtgattttctttattatatattcaatttattgatgtttatgttcttgatcagTTTTTGGCAGGAAATAAAAATTGCATTTGAGTGTAAAATAACAGAGTATAGTGTAGGGCCTTGTTCTTGATACTGTGCTAAATTTGTTGGATGGCGGAGA

Basic information

species Glycine max
transcript GLYMA07G05170.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213589359|gb|DB961692.1|DB961692
EST:     ACCAATTCTTCTTCTGCGTTGAATTGGGACAACGAGAAATTGGATCTCAG                         TTTTTGGCAGGAAATAAAAATTGCATTTGAGTGTAAAATAACAGAGTATAG
genomic: ACCAATTCTTCTTCTGCGTTGAATTGGGACAACGAGAAATTGGATCTCAGgtcaatttct ... tcttgatcagTTTTTGGCAGGAAATAAAAATTGCATTTGAGTGTAAAATAACAGAGTATAG
EST: gi|120495095|gb|EH223262.1|EH223262
EST:     ACCAATTCTTCTTCTGCGTTGAATTGGGACAACGAGAAATTGGATCTCAG                         TTTTTGGCAGGAAATAAAAATTGCATTTGAGTGTAAAATAACAGAGTATAG
genomic: ACCAATTCTTCTTCTGCGTTGAATTGGGACAACGAGAAATTGGATCTCAGgtcaatttct ... tcttgatcagTTTTTGGCAGGAAATAAAAATTGCATTTGAGTGTAAAATAACAGAGTATAG
EST: gi|24205463|gb|BU964716.1|BU964716
EST:     ACCAATTCTTCTTCTGCGTTGAATTGGGACAACGAGAAATTGGATCTCAG                         TTTTTGGCAGGAAATAAAAATTGCATTTGAGTGTAAAATAACAGAGTATAG
genomic: ACCAATTCTTCTTCTGCGTTGAATTGGGACAACGAGAAATTGGATCTCAGgtcaatttct ... tcttgatcagTTTTTGGCAGGAAATAAAAATTGCATTTGAGTGTAAAATAACAGAGTATAG
EST: gi|193318401|gb|FK286749.1|FK286749
EST:     ACCAATTCTTCTTCTGCGTTGAATTGGGACAACGAGAAATTGGATCTCAG                         TTTTTGGCAGGAAATAAAAATTGCATTTGAGTGTAAAATAACAGAGTATAG
genomic: ACCAATTCTTCTTCTGCGTTGAATTGGGACAACGAGAAATTGGATCTCAGgtcaatttct ... tcttgatcagTTTTTGGCAGGAAATAAAAATTGCATTTGAGTGTAAAATAACAGAGTATAG
EST: gi|9902562|gb|BE611593.1|BE611593
EST:     ACCAATTCTTCTTCTGCGTTGAATTGGGACAACGAGAAATTGGATCTCAG                         TTTTTGGCAGGAAATAAAAATTGCATTTGAGTGTAAAATAACAGAGTATAG
genomic: ACCAATTCTTCTTCTGCGTTGAATTGGGACAACGAGAAATTGGATCTCAGgtcaatttct ... tcttgatcagTTTTTGGCAGGAAATAAAAATTGCATTTGAGTGTAAAATAACAGAGTATAG
EST: gi|298173240|gb|HO020224.1|HO020224
EST:     ACCAATTCTTCTTCTGCGTTGAATTGGGACAACGAGAAATTGGATCTCAG                         TTTTTGGCAGGAAATAAAAATTGCATTTGAGTGTAAAATAACAGAGTATAG
genomic: ACCAATTCTTCTTCTGCGTTGAATTGGGACAACGAGAAATTGGATCTCAGgtcaatttct ... tcttgatcagTTTTTGGCAGGAAATAAAAATTGCATTTGAGTGTAAAATAACAGAGTATAG
EST: gi|298163944|gb|HO013589.1|HO013589
EST:     ACCAATTCTTCTTCTGCGTTGAATTGGGACAACGAGAAATTGGATCTCAG                         TTTTTGGCAGGAAATAAAAATTGCATTTGAGTGTAAAATAACAGAGTATAG
genomic: ACCAATTCTTCTTCTGCGTTGAATTGGGACAACGAGAAATTGGATCTCAGgtcaatttct ... tcttgatcagTTTTTGGCAGGAAATAAAAATTGCATTTGAGTGTAAAATAACAGAGTATAG
EST: gi|120491908|gb|EH220075.1|EH220075
EST:     ACCAATTCTTCTTCTGCGTTGAATTGGGACAACGAGAAATTGGATCTCAG                         TTTTTGGCAGGAAATAAAAATTGCATTTGAGTGTAAAATAACAGAGTATAG
genomic: ACCAATTCTTCTTCTGCGTTGAATTGGGACAACGAGAAATTGGATCTCAGgtcaatttct ... tcttgatcagTTTTTGGCAGGAAATAAAAATTGCATTTGAGTGTAAAATAACAGAGTATAG
EST: gi|9264559|gb|BE352706.1|BE352706
EST:     ACCAATTCTTCTTCTGCGTTGAATTGGGACAACGAGAAATTGGATCTCAG                         TTTTTGGCAGGAAATAAAAATTGCATTTGAGTGTAAAATAACAGAGTATAG
genomic: ACCAATTCTTCTTCTGCGTTGAATTGGGACAACGAGAAATTGGATCTCAGgtcaatttct ... tcttgatcagTTTTTGGCAGGAAATAAAAATTGCATTTGAGTGTAAAATAACAGAGTATAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtgattttctttattatatattcaatttattgatgtttatgttcttgatcagTTTTTGGCAGGAAATAAAAATTGCATTTGAGTGTAAAATAACAGAGTATAGTGTAGGGCCTTGTTCTTGATACTGTGCTAAATTTGTTGGATGGCGGAGA
                              tattgat  putative branch site (score: 3)
                                          tgttctt  putative PPT
      attttctttattatat  TA-rich tract