Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcatacaacaaccacccaccctagaaagtcataataagttttttgtgccttttcaaaaaaagtttttttgttttgtttatgcaattaaaagcatcacaaattaatgctaatgcattgtttcaatttcacagGAAAGCTCAACCAAGGATAACATTCCCAATTTTCATGCAAATTTTCATCCTAGCTCTACTTGG

Basic information

species Glycine max
transcript GLYMA06G46740.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27426985|gb|CA938505.1|CA938505
EST:     CATGCCTTTGCCACTGCTGTTGTCGCTCCATTTGCCTTCATCTTTGAAAG                         GAAAGCTCAACCAAGGATAACATTCCCAATTTTCATGCAAATTTTCATC
genomic: CATGCCTTTGCCACTGCTGTTGTCGCTCCATTTGCCTTCATCTTTGAAAGgttcatacaa ... aatttcacagGAAAGCTCAACCAAGGATAACATTCCCAATTTTCATGCAAATTTTCATC
EST: gi|209723499|gb|BW669502.1|BW669502
EST:     CATGCCTTTGCCACTGCTGTTGTCGCTCCATTTGCCTTCATCTTTGAAAG                         GAAAGCTCAACCAAGGATAACATTCCCAATTTTCATGCAAATTTTCATCCT
genomic: CATGCCTTTGCCACTGCTGTTGTCGCTCCATTTGCCTTCATCTTTGAAAGgttcatacaa ... aatttcacagGAAAGCTCAACCAAGGATAACATTCCCAATTTTCATGCAAATTTTCATCCT
EST: gi|19453389|gb|BM954799.1|BM954799
EST:     CATGCCTTTGCCACTGCTGTTGTCGCTCCATTTGCCTTCATCTTTGAAAG                         GAAAGCTCAACCAAGGATAACATTCCCAATTTTCATGCAAATTTTCATCCT
genomic: CATGCCTTTGCCACTGCTGTTGTCGCTCCATTTGCCTTCATCTTTGAAAGgttcatacaa ... aatttcacagGAAAGCTCAACCAAGGATAACATTCCCAATTTTCATGCAAATTTTCATCCT
EST: gi|213594520|gb|DB973677.1|DB973677
EST:     CATGCCTTTGCCACTGCTGTTGTCGCTCCATTTGCCTTCATCTTTGAAAG                         GAAAGCTCAACCAAGGATAACATTCCCAATTTTCATGCAAATTTTCATCCT
genomic: CATGCCTTTGCCACTGCTGTTGTCGCTCCATTTGCCTTCATCTTTGAAAGgttcatacaa ... aatttcacagGAAAGCTCAACCAAGGATAACATTCCCAATTTTCATGCAAATTTTCATCCT
EST: gi|209710126|gb|BW681066.1|BW681066
EST:     CATGCCTTTGCCACTGCTGTTGTCGCTCCATTTGCCTTCATCTTTGAAAG                         GAAAGCTCAACCAAGGATAACATTCCCAATTTTCATGCAAATTTTCATCCT
genomic: CATGCCTTTGCCACTGCTGTTGTCGCTCCATTTGCCTTCATCTTTGAAAGgttcatacaa ... aatttcacagGAAAGCTCAACCAAGGATAACATTCCCAATTTTCATGCAAATTTTCATCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgcaattaaaagcatcacaaattaatgctaatgcattgtttcaatttcacagGAAAGCTCAACCAAGGATAACATTCCCAATTTTCATGCAAATTTTCATCCTAGCTCTACTTGG
                            tgctaat  putative branch site (score: 2)
                     aaattaatgctaat  TA-rich tract