Sequence
atgc intronic sequence ATGC exonic sequence...tacatgttgggttgtgctgcgtgtcctcacacacacatggagaaacttcagctcaatatgctggtaaaattacatgtattaaccaggctctgattttcagCTATGCATTCTAATCTTTGTGGGACAAAACGGTTCAACATATTACAACACAGCAGCACTAGTTTCTTGCGTGCAAAGTTTCCCCGAGAGCAGAGGCCCCG
Basic information
species | Glycine max |
transcript | GLYMA06G17760.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209710329|gb|BW676393.1|BW676393EST: TTGTTTGGCTCATCGTCACTCACCAGTTCCCCGCTTTGCCTTTGTGGCTG CTATGCATTCTAATCTTTGTGGGACAAAACGGTTCAACATATTACAACACA
genomic: TTGTTTGGCTCATCGTCACTCACCAGTTCCCCGCTTTGCCTTTGTGGCTGgtatgttcaa ... tgattttcagCTATGCATTCTAATCTTTGTGGGACAAAACGGTTCAACATATTACAACACA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttcagctcaatatgctggtaaaattacatgtattaaccaggctctgattttcagCTATGCATTCTAATCTTTGTGGGACAAAACGGTTCAACATATTACAACACAGCAGCACTAGTTTCTTGCGTGCAAAGTTTCCCCGAGAGCAGAGGCCCCG
ttttc CT-rich tract
taaaattacatgtatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tacatgttgggttgtgctgcgtgtcctcacacacacatggagaaacttcagctcaatatgctggtaaaattacatgtattaaccaggctctgattttcagCTATGCATTCTAATCTTTGTGGGACAAAACGGTTCAACATATTACAACACAGCAGCACTAGTTTCTTGCGTGCAAAGTTTCCCCGAGAGCAGAGGCCCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - tgttggg
- - - - - - -gtgctgc
- - - - - - - - - - - -tcctcac
- - - - - - - - - - - - - - acacaca
- - - - - - - - - - - - - - - - - - - - - - -cttcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaggct