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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaagatctatcgccattgttccttcgttttttttcttttttcacaaacttcttcttcttcatcatctcatatcttcttgttgtttttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTCAAGTTCATTCGATGCTCCAACTGCGGCAAATGCTGTCCTAAG

Basic information

species Glycine max
transcript GLYMA06G14950.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G14950.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os01g60790.1 (Oryza sativa), 3'ss of exon 1
gtagaagatctatcgccattgttccttcgttttttttcttttttcacaaacttcttcttcttcatcatctcatatcttcttgttgtttttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTCAAGTTCATTCGATGCTCCAACTGCGGCAAATGCTGTCCTAAG
    |||  ||  |  |  | | | |        |   ||  ||  |    |||  |       | | |||   |||||||| ||  |  |   |||||| || |||||| | ||||| || |||||||| ||||| || ||||||||||||| ||| || ||||||||||||| ||| ||||| || |||
--gtaaggccttgcttccctatgctt--aacgcctagattgctttgcgggattcagcgctgaactgacctc---tcttcttgctgcatcggc--gcagACCTTCAAGCGCCGCAATGGCGGCCGCAACAAGCACGGTCGCGGCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG

upper sequence: GLYMA06G14950.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os05g39960.2 (Oryza sativa), 3'ss of exon 1
-----------------------------gtagaagatctatcgccattgttc-cttcgttttttttcttttttcacaaacttcttcttcttcatcatctcatatcttcttgttgtttttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTCAAGTTCATTCGATGCTCCAACTGCGGCAAATGCTGTCCTAAG
                              |||  |      || |   |  | |||||   | ||  | || ||       ||| |   ||  ||   ||  ||    ||  |  |||     |||||| || ||||||||||| || || |||||||| || ||||| ||||| || |||| ||| || ||||||||||||| ||| ||||| || |||
gtaaggagctcgccgcttccggatccaccctagccgccgcggcggcggcggccgcttcggcgtcttcttcttctccgctcaatctcccggttagtcccttctgattggtttcctcctttccctcgcagACCTTCAAGCGCAGGAACGGCGGCCGCAACAAGCATGGCCGCGGCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG

upper sequence: GLYMA06G14950.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM5G899149_T02 (Zea mays), 3'ss of exon 1
gtagaagatctatcgccattgttccttcgttttttttcttttttcacaaacttcttcttcttcatcatctcatatcttcttgttgtttttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTCAAGTTCATTCGATGCTCCAACTGCGGCAAATGCTGTCCTAAG-------
                  |   | |||||       |||   ||| |       ||    |  | | | |  | |  ||| ||||       | |||||| || ||||| |||||||| || |||||||| ||||| || ||||||||||||| ||| || ||||||||||||| ||| ||||| || |||       
-----------------gtgagttcttcgagaccaatctcccttctcgccgacgttgccgtctaacctttgttgttgtctggttgccg----ccgcagACGTTCAAGCGGAGGAATGGCGGACGCAACAAGCACGGGCGCGGCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGTAACAC

upper sequence: GLYMA06G14950.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM5G899149_T01 (Zea mays), 3'ss of exon 1
gtagaagatctatcgccattgttccttcgttttttttcttttttcacaaacttcttcttcttcatcatctcatatcttcttgttgtttttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTCAAGTTCATTCGATGCTCCAACTGCGGCAAATGCTGTCCTAAG
                  |   | |||||       |||   ||| |       ||    |  | | | |  | |  ||| ||||       | |||||| || ||||| |||||||| || |||||||| ||||| || ||||||||||||| ||| || ||||||||||||| ||| ||||| || |||
-----------------gtgagttcttcgagaccaatctcccttctcgccgacgttgccgtctaacctttgttgttgtctggttgccg----ccgcagACGTTCAAGCGGAGGAATGGCGGACGCAACAAGCACGGGCGCGGCCACGTCAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG

upper sequence: GLYMA06G14950.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G129015_T02 (Zea mays), 3'ss of exon 1
gtagaagatctatcgccattgttccttcgttttttttcttttttcacaaacttcttcttcttcatcatctcatatcttcttgttgtttttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTCAAGTTCATTCGATGCTCCAACTGCGGCAAATGCTGTCCTAAG
      || ||||||       || | |||  |   ||     || |   |  || ||   | | | | || | | ||   |||||  ||| | |||||| || ||||| ||||| || || |||||||| ||||| || ||||||||||||| ||| || ||||||||||||| ||| |||||||| |||
----gtgagctatcggagaccatc-tccgtcctccgtcacgcctcgccg-ccgctgctgtctaaccctttcttttgttg--gttgtggttgcc-gcagACGTTCAAGCGGAGGAACGGCGGACGCAACAAGCACGGGCGCGGCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG

upper sequence: GLYMA06G14950.1 (Glycine max), 3'ss of exon 1
lower sequence: AT2G40590.1 (Arabidopsis thaliana), 3'ss of exon 1
gtagaagatctatcgccattgttccttcgttttttttcttttttcacaaacttcttcttcttcatcatctcatatcttcttgttgtttttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTCAAGTTCATTCGATGCTCCAACTGCGGCAAATGCTGTCCTAAG
          ||    ||||  ||  | | || | ||    || ||  ||          || || ||||   ||     |||||||| ||| |||||||||| ||||| ||||| || ||  | ||||| |||  | | || ||||||||    ||  ||||||||||||||||||||||||| ||||||
---------gtactctcattcatcggttgcttatctttgaattacaataaagatagagaattgatgatcttccat-----tgttgtttgtgt-tgcagACTTTCAAGCGAAGGAACGGTGGGAGGAACAAGCACAACAGAGGACACGTCAACCCAATCAGATGCTCCAACTGCGGCAAATGCTGCCCTAAG

upper sequence: GLYMA06G14950.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 1
gtagaagatctatcgccattgttccttcgttttttttcttttttcacaaacttcttcttcttcatcatctcat--atcttcttgttgtttttgtct--gcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTCAAGTTCATTCGATGCTCCAACTGCGGCAAATGCTGTCCTAAG
              |  |   || | |||    |||   ||||   ||| |||  |     ||||  |||||   || || ||| |  || ||| |  |||||| || ||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||||
--------------gtgaggttttcctcgaaaatttcactttt---caatcttgcttgctatcatt-tctcaccgatttttttggtaattgtgtttttgcagACGTTCAAGCGAAGGAATGGTGGTCGCAACAAGCACGGCCGCGGCCACGTCAAGTTCATTCGCTGCTCCAACTGTGGCAAATGCTGCCCTAAG

upper sequence: GLYMA06G14950.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv13s0067g02700.t01 (Vitis vinifera), 3'ss of exon 2
gtagaagatctatcgccattgttccttcgttttttttcttttttcacaaacttcttcttcttcatcatctcatatcttcttgttgtttttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTCAAGTTCATTCGATGCTCCAACTGCGGCAAATGCTGTCCTAAG
    ||||||| ||  |  |   | ||    |    ||  | |||     || | |  |  |       ||| || |  || ||  || || ||| |||| || |||||||| || || || |||||||| ||||||||||| || ||||||||||| || ||||| |||||||| |||||||| || |||
--gtaagatctctcaaccatcaccattaccctcaactcaatcttcttcttctccgttgtgatgtaaccttcaaatttcgttattacttgtg-ctgtagACGTTCAAGCGCAGAAACGGCGGCCGCAACAAGCACGGCCGTGGACATGTCAAGTTCATCCGCTGCTCAAACTGCGGAAAATGCTGCCCAAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151405892|gb|EV275707.1|EV275707
EST:     AGATAGAGAGTTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: AGATAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|254339512|gb|GR848176.1|GR848176
EST:     TCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: TCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|207755499|gb|GD726594.1|GD726594
EST:     CTAGATTAGAGAGTTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: CTAGA-TAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|209707468|gb|BW664927.1|BW664927
EST:     GGTCTTCAGAATTCAGAAACCCTAGATAGAGAGTTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: GGTCTTCAGAATTCAGAAACCCTAGATAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|8283941|gb|BE021500.1|BE021500
EST:     GTTTCGTTCGCCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: GTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|192327627|gb|FK020660.1|FK020660
EST:     CTAGATAGAGAGTTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: CTAGATAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|213599525|gb|DB968350.1|DB968350
EST:     GGTCTTCAGAATTCAGAAACCCTAGATAGAGAGTTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: GGTCTTCAGAATTCAGAAACCCTAGATAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|13312419|gb|BG406070.1|BG406070
EST:     AGAGAGTTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACCAAACACGGCCCGTGGCCCAC
genomic: AGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAA-CAAACACGG-CCGTGG-CCAC
EST: gi|120530778|gb|EH258911.1|EH258911
EST:     AGAGTTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: AGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|208258393|gb|GE053314.1|GE053314
EST:     AGATAGAGAGTTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: AGATAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|13478211|gb|BG507777.1|BG507777
EST:     TTCAGAAACCCTAGATAGAGAGTTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: TTCAGAAACCCTAGATAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|7924504|gb|AW830530.1|AW830530
EST:     GAGTTTCGTTCGCCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: GAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|192314930|gb|FK010748.1|FK010748
EST:     TTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: TTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|19348570|gb|BM893102.1|BM893102
EST:     GTTTCGTTCGTCACCATG                         ACTTTTAAGCACAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: GTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|6134863|gb|AW133256.1|AW133256
EST:     GTTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: GTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|208323512|gb|GE119157.1|GE119157
EST:     CTAGATAGAGAGTTTCGTTCGTCACCATG                         AC-TTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: CTAGATAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|8402699|gb|BE058333.1|BE058333
EST:     TCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: TCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|15288218|gb|BI472109.1|BI472109
EST:     GTTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: GTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|254339513|gb|GR848177.1|GR848177
EST:     TTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: TTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|209699360|gb|BW664079.1|BW664079
EST:     CTAGATAGAGAGTTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: CTAGATAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|15337259|gb|BI497915.1|BI497915
EST:     AGAGAGTTTCGTTCGCCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: AGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|192331319|gb|FK021016.1|FK021016
EST:     CTAGATAGAGAGTTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: CTAGATAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|31456341|gb|CD398369.1|CD398369
EST:     GTTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACATACACGGCCGTGGCCACGTC
genomic: GTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|31470873|gb|CD412901.1|CD412901
EST:     GTTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: GTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|213611577|gb|DB960857.1|DB960857
EST:     TAGATAGAGAGTTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: TAGATAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|4314004|gb|AI461123.1|AI461123
EST:     TCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: TCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|254315954|gb|GR825763.1|GR825763
EST:     GTTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: GTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|193458742|gb|FK425063.1|FK425063
EST:     AGATAGAGAGTTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: AGATAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|151396921|gb|EV266794.1|EV266794
EST:     TAGATAGAGAGTTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: TAGATAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|6566793|gb|AW234425.1|AW234425
EST:     CGTTCGCCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: CGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|6454434|gb|AW185117.1|AW185117
EST:     GTTCGCCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: GTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|19053610|gb|BM732277.1|BM732277
EST:     TTCGTCACCATG                         ACTTTTAAGCGCAGGAATGAAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: TTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|8826402|gb|BE210132.1|BE210132
EST:     GTTTCGTTCGCCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: GTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|209707469|gb|BW664928.1|BW664928
EST:     AGAAACCCTAGATAGAGAGTTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: AGAAACCCTAGATAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|192305990|gb|FG993622.1|FG993622
EST:     GGTCTTCAGAATTCAGAAACCCTAGATAGAGAGTTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: GGTCTTCAGAATTCAGAAACCCTAGATAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|31469779|gb|CD411807.1|CD411807
EST:     GTTCGTCACCAATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGT
genomic: GTTCGTCACC-ATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGT
EST: gi|151397962|gb|EV267835.1|EV267835
EST:     AGAGAGTTTCGTTCGTCACCATG                         ACTTTTAAGCCCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: AGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|207766815|gb|GD735615.1|GD735615
EST:     AGATAGAGAGTTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: AGATAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|4301156|gb|AI443150.1|AI443150
EST:     GTTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: GTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|15662586|gb|BI699949.1|BI699949
EST:     GTTTCGTTCGCCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: GTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|208312939|gb|GE112625.1|GE112625
EST:     CTAGATAGAGAGTTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: CTAGATAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|7041720|gb|AW471561.1|AW471561
EST:     GTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: GTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|151407990|gb|EV277805.1|EV277805
EST:     AGATAGAGAGTTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: AGATAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|192322784|gb|FK014475.1|FK014475
EST:     TAGATAGAGAGTTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: TAGATAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
EST: gi|151409911|gb|EV279719.1|EV279719
EST:     CTAGATAGAGAGTTTCGTTCGTCACCATG                         ACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC
genomic: CTAGATAGAGAGTTTCGTTCGTCACCATGgtagaagatc ... ttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacaaacttcttcttcttcatcatctcatatcttcttgttgtttttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTCAAGTTCATTCGATGCTCCAACTGCGGCAAATGCTGTCCTAAG
                               tcttcttgttgttttt  CT-rich tract
                                       ttgttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtagaagatctatcgccattgttccttcgttttttttcttttttcacaaacttcttcttcttcatcatctcatatcttcttgttgtttttgtctgcagACTTTTAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGTGGCCACGTCAAGTTCATTCGATGCTCCAACTGCGGCAAATGCTGTCCTAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG