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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttccccactctttttctagaattctcatttcatgattgaattgaccaatcttttagttctcatgcaatacaaaatctctatcaattaaacttgatgattgtgcaatcgataatttcatattactacaatttgcttacagaaaataatgcccccacagATAATAGAACGACAGAGTTGTTTGTGGAGTGTGCATTGTACATTGATGGTGCACCGTTTGGCCTTCCTATGAGAACAAG

Basic information

species Glycine max
transcript GLYMA06G10090.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G10090.1 (Glycine max), 3'ss of exon 1
lower sequence: AT1G60490.1 (Arabidopsis thaliana), 3'ss of exon 1
gtttgtttccccactctttttctagaattctcatttcatgattgaattgaccaatcttttagttctcatgcaatacaaaatctctatcaattaaacttgatgattgtgcaatcgataat-----ttcatattactacaatttgcttacagaaaataatgcccccacagATAATAGAACGACAGAGTTGTTTGTGGAGTGTGCATTGTACATTGATGGTGCACCGTTTGGCCTTCCTATGAGAACAAG
                                              |   | ||| |||| | ||||   || |     ||    |  |  |  | ||||| ||  |  |||   || |     ||  | | | |    | || || ||| |  |    ||  | ||||  | | ||   ||||| | |   | ||||||||||||||||||||||| || || ||||||||||| |||||||||||
---------------------------------------------gtactcaaatatttttgatctcccacagttactgattgaaagaagcttgaattgattatgttctaatttttagtgcaaattggtttgatttatgtgtgttttcagGAGTTGTCTCCATCGCAGAGGAGAAAAAACCAGAGCTTTACATTGAGTGTGCATTGTACATTGATGGAGCTCCTTTTGGCCTTCCCATGAGAACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatcgataatttcatattactacaatttgcttacagaaaataatgcccccacagATAATAGAACGACAGAGTTGTTTGTGGAGTGTGCATTGTACATTGATGGTGCACCGTTTGGCCTTCCTATGAGAACAAG
                            tgcttac  putative branch site (score: 2)
                                            tgccccc  putative PPT
      ataatttcatattact  TA-rich tract