1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ccaacttttagcttcctagtgaaaccaaccattttgaattattttgtgaaaagttaaattctaatattaaaccttgttttaaacatgacaattttaacagGAGATGTCTACCTCTGTCATCAATGGGAATGATTCCCTAACTGGTCACATCATATCTACAACTATTGGAGGCAAAAATGGGGAACCCAAACAG
species | Glycine max |
transcript | GLYMA06G06850.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCTCCGCCATGGCTGAGGATAAG GAGATGTCTACCTCTGTCATCAATGGGAATGATTCCCTAACTGGTCACATCEST: gi|213600601|gb|DB960149.1|DB960149
genomic: CCCTCCGCCATGGCTGAGGATAAGgtactttccc ... attttaacagGAGATGTCTACCTCTGTCATCAATGGGAATGATTCCCTAACTGGTCACATC
EST: ATGGCTGAGGATAAG GAGATGTCTACCTCTGTCATCAATGGGAATGATTCCCTAACTGGTCACATCEST: gi|6070740|gb|AW100127.1|AW100127
genomic: ATGGCTGAGGATAAGgtactttccc ... attttaacagGAGATGTCTACCTCTGTCATCAATGGGAATGATTCCCTAACTGGTCACATC
EST: CCCTCCGCCATGGCTGAGGATAAG GAGATGTCTACCTCTGTCATCAATGGGAATGATTCCCTAACTGGTCACATCEST: gi|298191445|gb|HO038924.1|HO038924
genomic: CCCTCCGCCATGGCTGAGGATAAGgtactttccc ... attttaacagGAGATGTCTACCTCTGTCATCAATGGGAATGATTCCCTAACTGGTCACATC
EST: ATGGCTGAGGATAAG GAGATGTCTACCTCTGTCATCAATGGGAATGATTCCCTAACTGGTCACATC
genomic: ATGGCTGAGGATAAGgtactttccc ... attttaacagGAGATGTCTACCTCTGTCATCAATGGGAATGATTCCCTAACTGGTCACATC
gtgaaaagttaaattctaatattaaaccttgttttaaacatgacaattttaacagGAGATGTCTACCTCTGTCATCAATGGGAATGATTCCCTAACTGGTCACATCATATCTACAACTATTGGAGGCAAAAATGGGGAACCCAAACAG
ttctaat putative branch site (score: 2)
ttaaattctaatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaacttttagcttcctagtgaaaccaaccattttgaattattttgtgaaaagttaaattctaatattaaaccttgttttaaacatgacaattttaacagGAGATGTCTACCTCTGTCATCAATGGGAATGATTCCCTAACTGGTCACATCATATCTACAACTATTGGAGGCAAAAATGGGGAACCCAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
ccaactt
- - - - - gcttcct
- - - - - - - - - - - - ccaacca
- - - - - - - - - - - - - - - - - - - - -ttttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgac