1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttcttcatttcgccatttcctcctctttcgtttcaaattcatgctcttaaacggaatcgtacttttccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGA
species | Glycine max |
transcript | GLYMA05G37160.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATCEST: gi|193556870|gb|FK512331.1|FK512331
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATCEST: gi|208294990|gb|GE091197.1|GE091197
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
EST: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAG GAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
genomic: GCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGgtttcttcat ... ccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATC
cctctttcgtttcaaattcatgctcttaaacggaatcgtacttttccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGA
tcgtacttttccttct CT-rich tract
tttcaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttcttcatttcgccatttcctcctctttcgtttcaaattcatgctcttaaacggaatcgtacttttccttctgcagGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG