1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgggctttttgatccatagagtttaatatttagttgatttttagccctgacccatgttgggctatattgacttctctaattgtgatgatttgtggatcagAAGAGGAGGGAAGATATGGGTGCCAGCGAGAACAATAGTGCAAAACCAAGAGTACGCCCAATTGTACGCTTAGGGATCTTTCTCATCTCTCACAGCAACA
species | Glycine max |
transcript | GLYMA05G08990.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTGCTGTCTGCCACCGTCGCGTGTGGTCCCACCACTCCTTCTTTCTCAG AAGAGGAGGGAAGATATGGGTGCCAGCGAGAACAATAGTGCAAAACCAAGAEST: gi|193431199|gb|FK394621.1|FK394621
genomic: ATTGCTGTCTGCCACCGTCGCGTGTGGTCCCACCACTCCTTCTTTCTCAGgttccctctc ... tgtggatcagAAGAGGAGGGAAGATATGGGTGCCAGCGAGAACAATAGTGCAAAACCAAGA
EST: ATTGCTGTCTGCCACCGTCGCGTGTGGTCCCACCACTCCTTCTTTCTCAG AAGAGGAGGGAAGATATGGGTGCCAGCGAGAACAATAGTGCAAAACCAAGA
genomic: ATTGCTGTCTGCCACCGTCGCGTGTGGTCCCACCACTCCTTCTTTCTCAGgttccctctc ... tgtggatcagAAGAGGAGGGAAGATATGGGTGCCAGCGAGAACAATAGTGCAAAACCAAGA
cctgacccatgttgggctatattgacttctctaattgtgatgatttgtggatcagAAGAGGAGGGAAGATATGGGTGCCAGCGAGAACAATAGTGCAAAACCAAGAGTACGCCCAATTGTACGCTTAGGGATCTTTCTCATCTCTCACAGCAACA
tatattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgggctttttgatccatagagtttaatatttagttgatttttagccctgacccatgttgggctatattgacttctctaattgtgatgatttgtggatcagAAGAGGAGGGAAGATATGGGTGCCAGCGAGAACAATAGTGCAAAACCAAGAGTACGCCCAATTGTACGCTTAGGGATCTTTCTCATCTCTCACAGCAACA
- - - - - - - - - - - - - - - - - - - - - - ccctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgat