1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...ttatataagctttaactggtgattcttttttattcggttatatttattgtatataattctaaaatattaacgctaaattcatgtttacaatatatagcagGTGTGCTCATTCATTATCATTTGCCACAGTAGAAGCAGAAGAGATATCAGGTTCTAGGCCTGCTGAAGTTTTGAACCTGG
species | Glycine max |
transcript | GLYMA05G01300.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATTCAATTTCACGCAACCGCAATGCCTTTGCTTCTTTTGCTTTCTCTAG GTGTGCTCATTCATTATCATTTGCCACAGTAGAAGCAGAAGAGATATCAGGEST: gi|14259715|gb|BG882623.1|BG882623
genomic: GATTCAATTTCACGCAACCGCAATGCCTTTGCTTCTTTTGCTTTCTCTAGgtatctcttg ... tatatagcagGTGTGCTCATTCATTATCATTTGCCACAGTAGAAGCAGAAGAGATATCAGG
EST: GATTCAATTTCACGCAACCGCAATGCCTTTGCTTCTTTTGCTTTCTCTAG GTGTGCTCATTCATTATCATTTGCCACAGTAGAAGCAGAAGAGATATCAGGEST: gi|27426562|gb|CA938082.1|CA938082
genomic: GATTCAATTTCACGCAACCGCAATGCCTTTGCTTCTTTTGCTTTCTCTAGgtatctcttg ... tatatagcagGTGTGCTCATTCATTATCATTTGCCACAGTAGAAGCAGAAGAGATATCAGG
EST: GATTCAATTTCACGCAACCGCAATGCCTTTGCTTCTTTTGCTTTCTCTAGCAGEST: gi|19053090|gb|BM731757.1|BM731757
genomic: GATTCAATTTCACGCAACCGCAATGCCTTTGCTTCTTTTGCTTTCTCT---AGgtatctcttg ... tatatagc
EST: GATTCAATTTCACGCAACCGCAATGCCTTTGCTTCTTTTGCTTTCTCTAGCAGEST: gi|22931742|gb|BU548881.1|BU548881
genomic: GATTCAATTTCACGCAACCGCAATGCCTTTGCTTCTTTTGCTTTCTCT---AGgtatctcttg ... tatatagc
EST: GATTCAATTTCACGCAACCGCAATGCCTTTGCTTCTTTTGCTTTCTCTAG GTGTGCTCATTCATTATCATTTGCCACAGTAGAAGCAGAAGAGATATCAGG
genomic: GATTCAATTTCACGCAACCGCAATGCCTTTGCTTCTTTTGCTTTCTCTAGgtatctcttg ... tatatagcagGTGTGCTCATTCATTATCATTTGCCACAGTAGAAGCAGAAGAGATATCAGG
attgtatataattctaaaatattaacgctaaattcatgtttacaatatatagcagGTGTGCTCATTCATTATCATTTGCCACAGTAGAAGCAGAAGAGATATCAGGTTCTAGGCCTGCTGAAGTTTTGAACCTGG
atataattctaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatataagctttaactggtgattcttttttattcggttatatttattgtatataattctaaaatattaacgctaaattcatgtttacaatatatagcagGTGTGCTCATTCATTATCATTTGCCACAGTAGAAGCAGAAGAGATATCAGGTTCTAGGCCTGCTGAAGTTTTGAACCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - actggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtt